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OK042081.1__UCS82794.1__vBYenSP400_04__00004

Bact-Vir

OK042081.1__UCS82794.1__vBYenSP400_04__00004

Identity

Accession:
OK042081 ↗
Kingdom:
phage

Quality

68.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-57
PDB
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1dq3A03 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.77 51.0 4.36e-01 70.9% 43.7%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.72 50.0 3.89e-01 72.7% 95.8%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.72 49.0 3.44e-01 70.9% 64.7%
2mkyA00 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.71 48.0 4.74e-01 72.7% 67.2%
2gukA00 3.30.2190.10 Alpha Beta › 2-Layer Sandwich › PG1857-like › PG1857-like 0.68 53.0 4.27e-01 87.3% 46.8%
1yj7B01 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.67 45.0 4.17e-01 70.9% 53.5%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.67 46.0 4.30e-01 72.7% 59.1%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 44.0 3.85e-01 70.9% 43.5%
1g8mA03 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.67 55.0 4.14e-01 96.4% 57.1%
2q7eA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.66 46.0 3.08e-01 72.7% 36.8%
3bh1A03 3.40.140.40 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain 0.66 54.0 4.05e-01 94.5% 96.6%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.64 44.0 3.57e-01 72.7% 84.7%
3ieyB00 3.40.1350.150 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.64 44.0 3.19e-01 72.7% 26.3%
7bjkA02 3.55.40.20 Alpha Beta › 3-Layer(bab) Sandwich › minor pseudopilin epsh fold › Iron/manganese superoxide dismutase, C-terminal domain 0.64 54.0 4.36e-01 98.2% 77.0%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.64 44.0 3.56e-01 72.7% 89.9%
3tvzB00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 51.0 3.93e-01 92.7% 96.4%
2xrnA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.63 50.0 3.46e-01 96.4% 27.1%
1mkmA03 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.61 49.0 3.43e-01 96.4% 27.9%
3vx8A01 3.40.140.100 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 C-terminal domain 0.61 51.0 3.86e-01 96.4% 49.6%
1y0nA00 1.10.10.610 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › YehU-like 0.60 45.0 4.20e-01 81.8% 87.3%
1cc8A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 40.0 3.74e-01 70.9% 54.2%
2kvkA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.60 48.0 3.68e-01 96.4% 53.5%
2asfA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 39.0 3.08e-01 70.9% 56.0%
6kwzA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.58 40.0 3.36e-01 72.7% 45.9%
2fhqA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 40.0 3.06e-01 70.9% 79.3%
4xmqA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.58 47.0 3.57e-01 100.0% 37.6%
1mkiA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.58 44.0 3.13e-01 83.6% 30.8%
1xeeA01 3.10.20.390 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Chemotaxis-inhibiting protein CHIPS 0.57 43.0 3.85e-01 83.6% 90.2%
1a79A01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.57 39.0 3.30e-01 72.7% 44.0%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.57 40.0 3.27e-01 74.5% 96.2%
1dyoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 39.0 2.85e-01 72.7% 55.1%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.56 44.0 3.09e-01 96.4% 31.1%
3w1yB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 45.0 3.83e-01 96.4% 89.4%
2a1vA00 3.90.1150.30 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.56 43.0 3.34e-01 87.3% 49.3%
4kyxA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.55 39.0 2.88e-01 72.7% 61.9%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 39.0 3.30e-01 74.5% 56.0%
2v3sA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 45.0 3.79e-01 94.5% 53.1%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.54 41.0 3.23e-01 87.3% 75.9%
1xe0C00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.54 39.0 3.27e-01 78.2% 79.2%
7ovuA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 46.0 3.23e-01 100.0% 39.9%
3ddcB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 40.0 3.05e-01 80.0% 50.4%
1c1yB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 36.0 3.29e-01 70.9% 90.9%
4ewfA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 40.0 2.60e-01 83.6% 85.8%
2pnqA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.53 41.0 2.56e-01 92.7% 26.2%
1hbxA01 3.40.1810.10 Alpha Beta › 3-Layer(aba) Sandwich › SRF-like › Transcription factor, MADS-box 0.52 38.0 3.58e-01 81.8% 78.9%
1dc1A01 3.40.91.10 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › 0.52 37.0 2.52e-01 78.2% 41.0%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 42.0 2.87e-01 90.9% 87.7%
6hj2A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.50 40.0 2.66e-01 92.7% 91.6%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.50 34.0 2.63e-01 70.9% 32.5%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3976762 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.89 63.0 5.62e-01 74.5% 86.7%
4972219 242.1.1.0 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.87 59.0 5.26e-01 70.9% 52.0%
4483441 304.14.1.0 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) 0.86 60.0 5.32e-01 72.7% 53.3%
5046394 242.1.1.7 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.85 58.0 4.83e-01 72.7% 43.3%
3838105 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.84 58.0 5.33e-01 72.7% 57.1%
4997133 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.81 55.0 4.55e-01 70.9% 41.1%
4603561 304.14.1.1 a+b two layers › Alpha-beta plaits › Sporulation related repeat (SPOR) › Sporulation related repeat (SPOR) › SPOR 0.81 60.0 5.24e-01 78.2% 83.7%
4020561 306.3.1.0 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like 0.79 54.0 4.33e-01 70.9% 40.0%
5556 242.1.1.4 a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › Endonuc_subdom 0.77 51.0 4.19e-01 70.9% 38.8%
3171307 306.3.1.1 a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › SUI1 0.74 51.0 3.95e-01 70.9% 35.7%
3999010 3016.1.1.22 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › PDXDC1-like_cen2 0.69 47.0 3.72e-01 70.9% 52.7%
4972700 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.68 46.0 4.17e-01 70.9% 52.0%
1518911 4076.2.1.1 a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › MbtH 0.67 45.0 3.97e-01 72.7% 47.5%
5000533 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.67 45.0 3.59e-01 94.5% 35.8%
5010296 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.67 54.0 3.96e-01 96.4% 53.5%
5038088 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.66 44.0 4.25e-01 70.9% 61.5%
3661638 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.66 46.0 3.85e-01 96.4% 43.2%
3738154 3351.1.1.1 a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.65 53.0 4.19e-01 94.5% 72.8%
1392754 2008.2.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.65 44.0 3.67e-01 70.9% 41.1%
4180400 2492.1.1.25 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › DUF1846_C 0.64 52.0 3.86e-01 94.5% 80.0%
3519958 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.64 44.0 4.11e-01 72.7% 62.9%
3641903 263.1.1.0 a+b three layers › SRF-like › SRF-like › SRF-like 0.64 37.0 4.15e-01 81.8% 77.5%
4994897 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.64 43.0 3.26e-01 96.4% 28.1%
5042070 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.63 42.0 4.05e-01 70.9% 58.5%
3502011 390.1.1.0 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.62 54.0 4.74e-01 100.0% 69.4%
5052496 1.1.5.36 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyrid_ox_like 0.61 42.0 3.08e-01 72.7% 54.2%
3603204 304.110.1.1 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase 0.61 41.0 3.96e-01 70.9% 63.1%
4120506 243.11.1.4 a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein › PF29632 0.60 48.0 4.34e-01 92.7% 100.0%
3318217 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.60 44.0 3.89e-01 96.4% 53.8%
4274656 263.1.1.0 a+b three layers › SRF-like › SRF-like › SRF-like 0.60 42.0 3.14e-01 96.4% 29.3%
3818050 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.60 43.0 3.87e-01 96.4% 53.8%
3685473 109.4.1.295 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › COP9_hel_rpt 0.56 46.0 2.75e-01 96.4% 16.4%
4339550 304.110.1.1 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase 0.56 45.0 3.91e-01 96.4% 92.6%
3423636 263.1.1.1 a+b three layers › SRF-like › SRF-like › SRF-like › SRF-TF 0.56 40.0 3.39e-01 96.4% 45.3%
3922996 198.1.1.4 alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF3456 0.55 46.0 3.69e-01 100.0% 64.0%
4679654 223.6.1.1 a+b three layers › Profilin-like › GlcG-like › GlcG-like › HbpS-like 0.55 38.0 2.85e-01 74.5% 74.4%
4946461 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.55 42.0 2.78e-01 83.6% 92.4%
3924089 198.1.1.4 alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF3456 0.55 43.0 3.35e-01 94.5% 72.4%
4297645 5043.1.1.19 extended segments › Sensor proteins transmembrane domains › Htr2 transmembrane domain-like › Htr2 transmembrane domain-like › CusS 0.54 37.0 2.73e-01 72.7% 53.7%
3522554 221.1.1.36 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_N 0.54 43.0 3.32e-01 87.3% 72.0%
3997436 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 40.0 3.27e-01 83.6% 80.9%
4182798 2.1.1.88 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSD2 0.54 36.0 3.18e-01 70.9% 75.3%
3740758 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.53 35.0 3.04e-01 70.9% 45.0%
4944959 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.53 35.0 2.89e-01 90.9% 35.5%
3283078 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.52 41.0 3.27e-01 100.0% 77.2%
3785886 1.1.5.18 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › FMN_bind_2 0.52 40.0 2.87e-01 94.5% 61.0%
3924514 109.4.1.83 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Suf 0.51 42.0 2.76e-01 96.4% 27.9%
3988679 4019.1.1.1 alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.51 43.0 2.75e-01 98.2% 47.7%
4393929 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.51 34.0 2.16e-01 70.9% 32.6%