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OK042081.1__UCS82834.1__vBYenSP400_44__00044

Bact-Vir

OK042081.1__UCS82834.1__vBYenSP400_44__00044

Identity

Accession:
OK042081 ↗
Kingdom:
phage

Quality

76.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Yersinia_phage_vB_YenS_P400

TaxID: 2880895

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-53
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.75 41.0 2.80e-01 100.0% 15.6%
4tmaJ00 3.30.50.10 Alpha Beta › 2-Layer Sandwich › Erythroid Transcription Factor GATA-1; Chain A › Erythroid Transcription Factor GATA-1, subunit A 0.71 51.0 5.02e-01 84.9% 71.9%
1ob8A00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.64 35.0 2.63e-01 92.5% 21.0%
5jldA02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.62 44.0 2.85e-01 75.5% 28.2%
2x5eA00 3.20.20.370 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycoside hydrolase/deacetylase 0.59 40.0 2.57e-01 71.7% 15.8%
2gb5A01 3.90.79.20 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › 0.56 38.0 2.84e-01 71.7% 51.1%
3u37A02 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.55 45.0 2.92e-01 90.6% 88.7%
3akjA02 1.10.1070.20 Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › 0.55 37.0 2.54e-01 98.1% 18.4%
1vw5A00 3.30.70.1420 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Structure from the mobile metagenome of cole harbour salt marsh: integron cassette protein hfx_cass1 0.55 40.0 2.92e-01 77.4% 36.4%
1ul4A01 4.10.1100.10 Few Secondary Structures › Irregular › DNA-binding domain of squamosa promoter binding protein-like 12 (lacking the second zinc- binding site) › Transcription factor, SBP-box domain 0.54 36.0 3.44e-01 71.7% 58.5%
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.53 37.0 3.68e-01 77.4% 68.4%
2eo6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.53 38.0 3.14e-01 79.2% 92.6%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5018523 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.74 54.0 4.98e-01 79.2% 62.9%
4155531 377.1.1.15 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › YacG 0.73 51.0 5.27e-01 73.6% 82.0%
4944040 375.2.1.0 ↗ few secondary structure elements › Rubredoxin-like › YfgJ-like › YfgJ-like 0.68 42.0 4.45e-01 73.6% 73.3%
4970804 613.1.1.0 ↗ alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 0.64 52.0 3.28e-01 86.8% 33.6%
3661088 2003.1.4.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › DHS-like NAD/FAD-binding domain 0.64 44.0 2.89e-01 71.7% 56.7%
3932457 2005.1.1.7 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1d 0.61 44.0 2.79e-01 79.2% 34.1%
4968908 613.1.1.0 ↗ alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) 0.60 50.0 3.14e-01 90.6% 34.3%
3524770 358.1.1.3 ↗ a+b complex topology › SRCR-like › SRCR-like › SRCR-like › SRCR_2 0.60 42.0 3.47e-01 73.6% 82.1%
5064458 2004.1.1.195 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › UvrD_C 0.60 41.0 2.54e-01 73.6% 15.0%
None — 0.59 40.0 2.47e-01 71.7% 12.8%
3881333 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.56 44.0 3.47e-01 92.5% 40.0%
4024768 330.3.1.7 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like › AP2 0.56 41.0 4.07e-01 77.4% 85.5%
5028095 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.56 40.0 3.20e-01 75.5% 79.0%
4028791 252.2.1.1 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › AP2 0.56 40.0 3.98e-01 75.5% 81.8%
4126633 386.1.1.75 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Rua1_C 0.56 40.0 3.70e-01 79.2% 97.2%
1621265 2007.5.1.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL 0.56 46.0 2.74e-01 90.6% 58.7%
3656818 376.1.3.9 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › PHD_2 0.55 40.0 3.81e-01 83.0% 67.1%
4408393 2003.1.5.174 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › tRNA_U5-meth_tr, Methyltransf_15 0.54 45.0 2.67e-01 92.5% 45.5%
3400447 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.53 45.0 3.04e-01 100.0% 44.8%
3620992 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.53 36.0 3.69e-01 83.0% 78.0%
3276150 2.1.1.52 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Stn1 0.53 46.0 3.38e-01 100.0% 65.3%
3537276 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.52 39.0 3.31e-01 94.3% 45.3%
3224950 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 43.0 3.43e-01 90.6% 45.7%
4029640 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 37.0 2.26e-01 79.2% 11.5%
3859003 376.1.1.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 0.51 38.0 3.38e-01 96.2% 52.2%
4001648 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.50 43.0 2.66e-01 100.0% 86.6%