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OK094707.1__UCR75639.1__PAER4900a_00077__00077

Bact-Vir

OK094707.1__UCR75639.1__PAER4900a_00077__00077

Identity

Accession:
OK094707 ↗
Kingdom:
phage

Quality

72.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1-88
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5ffdA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.84 64.0 5.45e-01 79.5% 93.4%
4a25B01 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.83 64.0 5.18e-01 81.8% 86.3%
4hfkB00 1.20.120.1620 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.83 44.0 4.24e-01 94.3% 48.0%
1xg2B00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.82 75.0 6.22e-01 100.0% 70.2%
2rldA00 1.20.1440.60 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence 0.80 72.0 6.64e-01 100.0% 90.4%
1fewA00 1.20.58.70 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.80 60.0 4.75e-01 79.5% 69.9%
5hayA02 1.25.40.440 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Nucleoporin, helical domain, central subdomain 0.79 49.0 5.22e-01 77.3% 70.9%
1i6zA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.77 59.0 5.07e-01 80.7% 74.1%
4etrB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.77 58.0 5.19e-01 79.5% 90.2%
5figA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.76 69.0 6.61e-01 100.0% 92.0%
2fu2A00 1.20.1440.50 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Ta0600-like 0.76 61.0 6.45e-01 98.9% 98.7%
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.76 57.0 5.34e-01 79.5% 100.0%
3ck6C02 1.20.58.340 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Magnesium transport protein CorA, transmembrane region 0.75 56.0 5.12e-01 80.7% 81.5%
3kavA00 1.20.1270.360 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.74 67.0 6.41e-01 100.0% 86.3%
1t72A02 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.73 55.0 5.33e-01 79.5% 90.8%
2oduA02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.73 54.0 5.17e-01 79.5% 87.6%
3pe0A01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.71 53.0 5.11e-01 79.5% 94.1%
2yw6B00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.70 65.0 5.38e-01 100.0% 64.0%
2radA03 1.20.1440.30 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Biosynthetic Protein domain 0.70 61.0 5.48e-01 98.9% 73.2%
2p61A00 1.20.120.490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Hypothetical protein TM1646-like domain 0.70 52.0 4.81e-01 79.5% 64.0%
3ez0C00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.69 52.0 3.98e-01 80.7% 63.0%
3v5uA02 1.20.1420.30 Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › NCX, central ion-binding region 0.69 51.0 3.80e-01 78.4% 34.4%
1ugoA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.68 58.0 5.57e-01 92.0% 90.9%
3qa8A04 1.20.1270.250 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.67 50.0 3.74e-01 80.7% 73.4%
4hfvA01 1.20.1440.330 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.65 57.0 5.21e-01 97.7% 86.3%
1ia6A00 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.65 57.0 3.57e-01 93.2% 34.5%
3bt5A00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.65 58.0 4.87e-01 100.0% 69.5%
1fpoC02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.64 51.0 5.14e-01 88.6% 90.1%
2fonA04 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.60 53.0 4.72e-01 100.0% 78.3%
4btfA01 1.20.930.20 Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › Adaptor protein Cbl, N-terminal domain 0.59 49.0 4.74e-01 88.6% 92.0%
1vu2201 1.20.58.1070 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 51.0 4.19e-01 100.0% 85.9%
5u9nB00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.58 49.0 4.55e-01 100.0% 85.0%
1ny9A00 1.10.490.50 Mainly Alpha › Orthogonal Bundle › Globin-like › Antibiotic binding domain of TipA-like multidrug resistance regulators 0.58 43.0 4.22e-01 78.4% 92.6%
6ne6A01 1.10.400.10 Mainly Alpha › Orthogonal Bundle › GI Alpha 1, domain 2-like › GI Alpha 1, domain 2-like 0.56 49.0 4.56e-01 100.0% 85.1%
3h36A00 1.10.10.400 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain 0.56 42.0 4.43e-01 92.0% 92.3%
1t5oA01 1.20.120.420 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 0.56 45.0 3.94e-01 90.9% 73.0%
6fakA01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.53 38.0 3.81e-01 78.4% 95.8%
5ejrA01 1.25.40.530 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain 0.52 44.0 3.47e-01 96.6% 75.6%
ECOD (43)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3515234 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.84 61.0 5.09e-01 79.5% 46.2%
4019714 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.84 76.0 6.84e-01 100.0% 89.2%
3325610 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.79 59.0 5.42e-01 78.4% 61.8%
4021783 3615.1.1.0 alpha bundles › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain › Bacterial dynamin-like protein helical domain 0.78 71.0 5.98e-01 100.0% 71.0%
5075503 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.78 70.0 6.32e-01 100.0% 95.0%
4972169 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.77 71.0 6.33e-01 100.0% 88.3%
3668980 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.77 69.0 6.00e-01 100.0% 93.3%
3482714 4156.1.1.0 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like 0.77 57.0 4.36e-01 78.4% 89.2%
3283207 633.22.1.0 alpha bundles › Bromodomain-like › Vitamin K epoxide reductase (VKOR) › Vitamin K epoxide reductase (VKOR) 0.76 68.0 5.94e-01 100.0% 84.3%
3279916 633.21.1.34 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › DUF7144 0.76 69.0 6.29e-01 100.0% 95.7%
4223322 603.1.1.0 alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.76 64.0 5.35e-01 100.0% 54.0%
3244475 4156.1.1.3 alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › DSHCT 0.75 56.0 4.56e-01 78.4% 89.4%
3719985 601.14.1.0 alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin 0.75 66.0 6.29e-01 100.0% 83.8%
3559718 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.74 56.0 5.19e-01 79.5% 86.4%
3710423 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.74 55.0 4.87e-01 78.4% 64.0%
4438700 622.1.1.0 alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain 0.73 56.0 5.76e-01 90.9% 83.5%
5076373 633.21.1.0 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 0.73 66.0 6.27e-01 100.0% 89.5%
3447211 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.73 54.0 4.11e-01 78.4% 63.9%
5031388 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.71 64.0 5.87e-01 100.0% 87.7%
3519608 604.1.1.11 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PigN 0.71 63.0 4.55e-01 100.0% 63.9%
3303162 601.14.1.10 alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › PIEZO 0.71 64.0 5.68e-01 100.0% 84.8%
3968993 109.4.1.637 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF2339 0.70 53.0 3.57e-01 80.7% 21.8%
3979768 633.12.1.0 alpha bundles › Bromodomain-like › Ta0600-like › Ta0600-like 0.68 60.0 5.76e-01 98.9% 98.0%
3999487 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.68 50.0 4.49e-01 78.4% 92.0%
3215435 616.1.1.0 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain 0.68 57.0 4.87e-01 93.2% 94.5%
3599875 3291.1.1.0 alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.68 59.0 5.07e-01 100.0% 60.7%
3819103 633.21.1.33 alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › PIEZO 0.66 59.0 5.62e-01 100.0% 97.1%
5005610 601.1.1.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin 0.65 51.0 4.95e-01 85.2% 76.8%
4182984 6155.1.1.0 alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter 0.64 47.0 4.47e-01 80.7% 73.6%
3506410 604.13.1.1 alpha bundles › Spectrin repeat-like › USP8 N-terminal domain-like › USP8 N-terminal domain-like › USP8_dimer 0.64 46.0 4.14e-01 78.4% 55.4%
4966516 604.12.1.142 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › NfeD_membrane 0.63 55.0 4.83e-01 98.9% 64.6%
5057918 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.62 47.0 3.20e-01 79.5% 29.7%
3543090 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.62 46.0 4.39e-01 80.7% 94.3%
3447427 616.1.1.1 alpha arrays › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › S15/NS1 RNA-binding domain › Ribosomal_S15 0.62 47.0 4.10e-01 83.0% 55.7%
3559937 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.61 44.0 4.22e-01 78.4% 87.6%
3712289 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.60 44.0 3.97e-01 78.4% 56.0%
3178110 610.4.1.1 alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY 0.59 54.0 4.30e-01 100.0% 52.7%
4262515 610.4.1.1 alpha arrays › ERP29 C domain-like › YqeY domain › YqeY domain › YqeY 0.58 54.0 5.14e-01 100.0% 88.0%
3776055 109.4.1.941 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › LTN1_E3_ligase_5th 0.58 49.0 3.83e-01 94.3% 58.5%
3262205 633.24.1.0 alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain 0.55 45.0 4.54e-01 92.0% 90.0%
3916200 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 46.0 3.00e-01 100.0% 20.9%
3170802 101.1.1.133 alpha arrays › HTH › HTH › Three-helical HTH › Vhr1 0.53 38.0 3.76e-01 100.0% 70.5%
4324174 194.1.1.1 alpha complex topology › Serum albumin-like › Serum albumin-like › Serum albumin-like › Serum_albumin 0.52 43.0 3.42e-01 94.3% 48.5%
D2 medium residues 177-251
PDB
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xrhA02 3.30.1370.60 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, NADPH binding domain 0.60 41.0 2.93e-01 72.0% 43.9%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 45.0 3.72e-01 81.3% 75.9%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 46.0 3.79e-01 86.7% 67.9%
3e6mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 40.0 3.30e-01 77.3% 66.4%
5dymA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.54 37.0 3.46e-01 90.7% 55.2%
5jeaD00 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.51 43.0 3.03e-01 92.0% 99.6%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3384455 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.69 38.0 2.81e-01 82.7% 22.2%
3227450 5001.1.1.41 alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.67 60.0 3.86e-01 100.0% 24.3%
4931721 4333.1.1.1 a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › Methylase_S 0.65 58.0 3.68e-01 100.0% 50.0%
4618205 604.1.1.150 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF28954 0.63 46.0 3.89e-01 80.0% 47.5%
4998571 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.61 42.0 3.56e-01 73.3% 100.0%
1124429 180.1.1.4 alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › VCPO_2nd 0.60 49.0 3.49e-01 93.3% 62.0%
3439866 101.1.2.88 alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.58 42.0 3.33e-01 80.0% 39.3%
4527067 206.1.3.40 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_YheCD 0.57 43.0 3.05e-01 82.7% 51.8%