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OK172329.1__UCR75332.1__vBAfQDWS535_42__00042

Bact-Vir

OK172329.1__UCR75332.1__vBAfQDWS535_42__00042

Identity

Accession:
OK172329 ↗
Kingdom:
phage

Quality

88.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Alcaligenes_phage_vB_Af_QDWS535

TaxID: 2877942

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-69
PDB
Domain cluster: representative
CATH (56)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5egwA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.77 66.0 4.13e-01 95.5% 57.0%
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.75 65.0 4.41e-01 95.5% 36.8%
4ft4B01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.74 66.0 5.05e-01 98.5% 80.7%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.74 59.0 6.09e-01 92.5% 93.5%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.73 63.0 4.68e-01 97.0% 46.8%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.72 62.0 4.78e-01 95.5% 58.3%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.72 63.0 4.87e-01 97.0% 72.4%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.71 54.0 5.65e-01 92.5% 88.7%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.71 58.0 4.51e-01 91.0% 52.7%
6guuA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 46.0 5.02e-01 71.6% 83.3%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.70 61.0 4.85e-01 100.0% 80.1%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.70 61.0 5.06e-01 100.0% 80.2%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.69 52.0 5.14e-01 86.6% 76.1%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.69 51.0 5.31e-01 79.1% 88.7%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 55.0 5.25e-01 92.5% 73.8%
4jrnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.69 60.0 4.79e-01 100.0% 80.1%
1jb0E00 2.30.30.50 Mainly Beta › Roll › SH3 type barrels. › 0.68 54.0 5.41e-01 86.6% 95.7%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.68 51.0 4.98e-01 86.6% 75.0%
3h6zA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 59.0 4.94e-01 100.0% 58.0%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 57.0 4.78e-01 95.5% 63.2%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.66 55.0 4.23e-01 92.5% 72.1%
1u04A02 3.90.70.180 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.66 56.0 4.80e-01 97.0% 92.9%
5j3tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 53.0 4.39e-01 95.5% 65.1%
2x6hA02 3.30.1010.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 0.63 53.0 4.11e-01 95.5% 76.4%
4p78C00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.63 43.0 4.37e-01 71.6% 72.7%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 49.0 5.09e-01 97.0% 92.1%
3qkgA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.62 52.0 4.01e-01 98.5% 70.7%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.61 43.0 3.62e-01 73.1% 73.5%
1ew3A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 52.0 4.07e-01 100.0% 68.6%
4c2dA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.60 45.0 4.02e-01 79.1% 81.7%
1dfvA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.60 50.0 3.84e-01 98.5% 66.5%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.59 51.0 4.94e-01 95.5% 86.7%
2zplB00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.59 45.0 4.01e-01 82.1% 93.6%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 49.0 3.91e-01 95.5% 62.0%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.58 40.0 4.04e-01 71.6% 83.6%
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.58 44.0 2.93e-01 82.1% 30.1%
4tm3A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 50.0 3.11e-01 98.5% 40.3%
8aimG01 3.10.450.20 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Bacteriophage PBS2, uracil-glycosylase inhibitor 0.58 44.0 4.22e-01 85.1% 75.3%
2acaA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.58 46.0 3.50e-01 91.0% 81.0%
2b4wA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.57 49.0 3.25e-01 98.5% 25.8%
3dghA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 49.0 4.02e-01 95.5% 92.7%
1w99A03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.57 41.0 3.06e-01 76.1% 78.9%
1jsgA00 2.40.15.10 Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 0.57 41.0 3.52e-01 77.6% 81.1%
5w17A01 2.40.128.110 Mainly Beta › Beta Barrel › Lipocalin › Lipid/polyisoprenoid-binding, YceI-like 0.56 43.0 3.46e-01 88.1% 87.3%
4iykA02 2.60.40.2060 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 46.0 3.80e-01 91.0% 83.1%
2lezA00 3.30.2450.10 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › Secreted effector protein pipB2 0.55 38.0 3.27e-01 89.6% 41.7%
2gu3A02 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 43.0 4.44e-01 95.5% 93.7%
4l8jA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.54 46.0 4.22e-01 100.0% 73.7%
3khpD01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 44.0 3.55e-01 91.0% 94.1%
2e50B02 3.30.1120.90 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › Nucleosome assembly protein 0.54 40.0 3.44e-01 80.6% 96.4%
2o62A02 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 45.0 3.64e-01 97.0% 72.3%
3i3lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 41.0 2.53e-01 83.6% 35.5%
6i4pA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.53 47.0 3.83e-01 100.0% 94.4%
2o62A01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.53 45.0 3.72e-01 100.0% 90.8%
3butA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 40.0 3.30e-01 88.1% 87.2%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.50 34.0 3.54e-01 71.6% 95.1%
ECOD (77)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3585538 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.77 66.0 5.76e-01 98.5% 63.0%
3793962 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.77 63.0 5.74e-01 91.0% 66.7%
4605602 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 55.0 5.66e-01 85.1% 80.0%
3491615 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.75 62.0 4.13e-01 95.5% 24.0%
3495447 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.75 61.0 5.06e-01 95.5% 50.0%
3411858 4.1.1.456 ↗ beta barrels › SH3 › SH3 › SH3 › BAH, BAHCC1-like_Tudor, SH3_TNRC18 0.75 66.0 3.99e-01 97.0% 25.0%
3256432 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.75 57.0 6.02e-01 91.0% 91.7%
3388887 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.75 50.0 5.10e-01 71.6% 70.8%
3582876 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.75 63.0 5.41e-01 97.0% 59.0%
3461775 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 59.0 5.68e-01 85.1% 94.7%
3507146 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.74 57.0 5.29e-01 92.5% 65.9%
4642857 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 65.0 6.11e-01 97.0% 92.5%
4093836 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 58.0 6.11e-01 97.0% 96.7%
3212772 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.74 59.0 5.79e-01 91.0% 79.7%
3238955 4.1.1.377 ↗ beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.74 62.0 5.93e-01 100.0% 78.8%
3564972 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.74 58.0 5.73e-01 97.0% 80.0%
4501723 4.8.1.45 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Peptidase_U57 0.74 56.0 6.07e-01 97.0% 100.0%
3768347 4.1.1.230 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7030 0.74 63.0 6.39e-01 92.5% 95.4%
4049824 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.73 57.0 4.80e-01 97.0% 49.6%
7380 219.1.1.34 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C47 0.73 63.0 4.68e-01 97.0% 46.8%
3400005 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.73 49.0 5.20e-01 73.1% 78.3%
3670468 4.1.1.332 ↗ beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.73 63.0 5.09e-01 97.0% 62.3%
3568329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 56.0 5.90e-01 92.5% 93.3%
3474784 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.72 62.0 4.57e-01 95.5% 60.0%
3236073 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.72 61.0 5.89e-01 98.5% 84.0%
4152374 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 62.0 5.78e-01 97.0% 89.3%
4956443 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 56.0 5.87e-01 97.0% 95.0%
5051313 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 57.0 5.82e-01 97.0% 90.8%
3392130 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.71 57.0 5.85e-01 95.5% 90.8%
3550047 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.71 59.0 4.37e-01 91.0% 55.9%
3925471 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.71 46.0 4.81e-01 74.6% 73.3%
3992087 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.71 63.0 4.71e-01 100.0% 52.9%
3670066 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.71 59.0 4.53e-01 92.5% 50.3%
3488114 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 56.0 4.64e-01 97.0% 48.3%
3510024 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.71 59.0 5.03e-01 92.5% 80.9%
3758536 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 59.0 5.87e-01 100.0% 90.0%
3870945 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 59.0 4.17e-01 92.5% 48.0%
None — 0.70 58.0 4.34e-01 92.5% 59.4%
3621303 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 59.0 4.79e-01 95.5% 63.8%
3629536 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 56.0 4.98e-01 97.0% 62.1%
3521904 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 58.0 5.26e-01 95.5% 85.3%
3798312 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 58.0 5.77e-01 97.0% 90.0%
4261760 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.69 60.0 5.42e-01 100.0% 88.4%
4026274 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 60.0 4.71e-01 97.0% 47.1%
4029199 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 60.0 3.36e-01 97.0% 8.8%
3396897 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.69 52.0 5.41e-01 82.1% 92.1%
3530891 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.69 59.0 5.03e-01 95.5% 63.3%
3923766 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 60.0 5.04e-01 98.5% 79.1%
5017073 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.68 53.0 4.10e-01 95.5% 38.0%
2866962 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.68 60.0 5.13e-01 100.0% 66.7%
3927213 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.68 59.0 5.86e-01 100.0% 94.3%
3935716 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.67 56.0 5.41e-01 92.5% 84.0%
3815495 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.67 56.0 5.53e-01 92.5% 91.4%
4929262 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.66 54.0 4.21e-01 92.5% 41.3%
3176265 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.65 53.0 4.14e-01 94.0% 43.9%
4114383 4.8.1.47 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › zf_CCCH_4 0.64 49.0 4.59e-01 83.6% 94.1%
3210555 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.64 55.0 3.51e-01 100.0% 26.2%
3894729 4.1.1.461 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH 0.63 53.0 4.84e-01 94.0% 94.4%
4530545 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.62 52.0 4.67e-01 94.0% 93.7%
3549321 4.11.1.5 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24, PF31032 0.62 52.0 4.04e-01 97.0% 42.5%
4863266 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.62 46.0 4.70e-01 92.5% 83.1%
4022367 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 51.0 4.50e-01 94.0% 79.0%
3660366 2003.1.2.20 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › HI0933_like 0.60 47.0 3.04e-01 85.1% 54.7%
4491369 2003.1.3.8 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Mqo 0.59 46.0 3.00e-01 85.1% 43.0%
3614740 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.59 47.0 3.88e-01 91.0% 75.4%
3173920 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.58 52.0 3.32e-01 100.0% 34.1%
4531826 2003.1.3.8 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Mqo 0.58 45.0 2.97e-01 85.1% 46.4%
None — 0.58 45.0 2.99e-01 85.1% 60.7%
4995934 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.57 48.0 3.06e-01 95.5% 32.1%
4673289 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.56 48.0 3.64e-01 100.0% 93.7%
4928905 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.56 49.0 3.62e-01 100.0% 63.9%
None — 0.55 47.0 3.00e-01 95.5% 31.8%
4945078 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.55 48.0 3.72e-01 100.0% 94.8%
None — 0.54 48.0 3.06e-01 100.0% 33.5%
3210237 2003.1.2.18 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.54 38.0 2.38e-01 77.6% 56.9%
4035868 2003.1.2.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox 0.54 45.0 3.70e-01 95.5% 86.2%
3961918 2003.1.3.8 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Mqo 0.53 43.0 2.85e-01 91.0% 78.6%
D2 medium residues 73-131
PDB
Domain cluster: representative
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1g8jB00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.66 52.0 4.08e-01 88.1% 84.4%
3nvoA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.64 40.0 3.13e-01 79.7% 28.2%
2hn1A01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.63 44.0 3.37e-01 79.7% 31.0%
3sokB00 3.30.700.10 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin 0.62 45.0 3.52e-01 81.4% 54.2%
4egwA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.61 42.0 3.37e-01 79.7% 33.6%
3u1kC01 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.61 50.0 3.45e-01 96.6% 94.7%
2bbhA01 3.30.460.20 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › CorA soluble domain-like 0.61 43.0 3.25e-01 79.7% 29.8%
1g4wR02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.61 46.0 3.19e-01 84.7% 42.1%
2kvaA01 2.70.130.10 Mainly Beta › Distorted Sandwich › Cation-dependent Mannose-6-phosphate Receptor; Chain A › Mannose-6-phosphate receptor binding domain 0.59 41.0 3.18e-01 74.6% 90.1%
3nwsA01 2.40.50.800 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 40.0 3.09e-01 74.6% 67.4%
4jgwA01 1.20.870.10 Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 0.57 41.0 3.08e-01 78.0% 36.5%
1lyvA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.56 42.0 2.77e-01 83.1% 35.3%
4c47A01 2.60.40.1620 Mainly Beta › Sandwich › Immunoglobulin-like › Lipoprotein YajI-like 0.56 44.0 3.62e-01 91.5% 91.0%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.56 47.0 3.89e-01 98.3% 86.0%
3rmhB00 2.40.50.810 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 38.0 2.98e-01 72.9% 60.2%
3rlfF03 2.40.430.10 Mainly Beta › Beta Barrel › Periplasmic binding protein-like II › D-maltodextrin-binding protein, MBP 0.54 41.0 3.72e-01 98.3% 58.0%
1f2uA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.54 45.0 3.47e-01 98.3% 61.1%
4ufcA01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.54 45.0 2.88e-01 100.0% 45.2%
1y7bA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.54 45.0 2.92e-01 98.3% 55.1%
2fpnA02 3.30.360.40 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › YwmB-like 0.53 39.0 3.84e-01 81.4% 76.9%
2prxA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.53 37.0 3.04e-01 74.6% 79.8%
3qeeB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 44.0 2.89e-01 98.3% 44.5%
3btxA00 2.60.120.590 Mainly Beta › Sandwich › Jelly Rolls › Alpha-ketoglutarate-dependent dioxygenase AlkB-like 0.52 39.0 2.72e-01 81.4% 90.2%
1r7lA00 3.30.2120.10 Alpha Beta › 2-Layer Sandwich › Bacillus phage protein › Bacillus phage protein-like 0.51 40.0 3.37e-01 91.5% 50.5%
2db2A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 38.0 3.36e-01 84.7% 64.9%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4138084 66.1.1.1 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain › Rieske 0.66 52.0 4.02e-01 88.1% 78.3%
3170205 4106.1.1.1 ↗ few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC 0.63 52.0 3.82e-01 98.3% 32.9%
3678022 2004.1.1.29 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.63 53.0 3.75e-01 96.6% 42.6%
3453043 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.61 53.0 3.33e-01 98.3% 21.3%
3368132 4099.1.1.4 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-O 0.60 47.0 3.90e-01 91.5% 85.0%
4272986 274.1.1.1 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits › Pilin 0.60 44.0 3.44e-01 81.4% 62.9%
4884147 212.1.1.10 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_PH 0.60 45.0 3.40e-01 84.7% 92.4%
3328470 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.60 47.0 3.77e-01 91.5% 80.8%
4416182 241.15.1.3 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › SPC25 0.59 46.0 3.86e-01 86.4% 80.0%
3201714 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.98e-01 94.9% 100.0%
5057515 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.57 42.0 4.28e-01 81.4% 95.0%
3256053 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.56 46.0 4.17e-01 100.0% 67.8%
4410756 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.56 46.0 3.65e-01 100.0% 42.2%
3420106 5.1.2.29 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › DUF1668 0.55 39.0 3.20e-01 74.6% 47.4%
3699382 5.1.2.33 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › BNR_3 0.55 47.0 3.23e-01 98.3% 74.2%
3781333 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 38.0 2.94e-01 72.9% 81.4%
4132819 212.1.1.10 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › RNase_PH 0.55 44.0 3.35e-01 93.2% 93.5%
3672600 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 44.0 2.84e-01 100.0% 77.1%
3936589 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.53 39.0 2.44e-01 83.1% 23.4%
3263932 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 41.0 3.22e-01 91.5% 53.6%
5074243 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 39.0 3.44e-01 86.4% 69.5%
4126991 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.51 38.0 3.39e-01 83.1% 76.7%
D3 medium residues 132-206
PDB
Domain cluster: representative
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1zs7A01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.63 45.0 4.11e-01 76.0% 100.0%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.61 51.0 4.61e-01 93.3% 78.4%
1yw5A01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.60 36.0 3.90e-01 98.7% 71.4%
4iiqC02 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.58 44.0 3.40e-01 82.7% 82.0%
4tpsA00 3.30.310.250 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Sporulation inhibitor of replication protein SirA 0.57 42.0 3.50e-01 90.7% 42.9%
1q7fB00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.56 42.0 2.88e-01 81.3% 29.1%
3vgzC00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 43.0 2.83e-01 82.7% 34.1%
3qijB03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 40.0 3.82e-01 76.0% 71.9%
6yleA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 41.0 2.63e-01 80.0% 26.0%
1ijqA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 40.0 2.81e-01 81.3% 33.5%
2yadA00 3.30.390.150 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.52 35.0 3.54e-01 70.7% 74.0%
3s8zA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 46.0 3.02e-01 100.0% 75.9%
4boeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 41.0 3.41e-01 94.7% 77.3%
1v7pB00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.50 42.0 3.62e-01 94.7% 79.5%
1q7hA01 3.10.450.120 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Pre-PUA domain; domain 1 0.50 38.0 4.00e-01 85.3% 93.8%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3700776 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.66 49.0 5.03e-01 78.7% 94.3%
5011313 3504.3.1.1 ↗ beta barrels › MutM N-terminal domain-like › Fibrinogen binding protein N-terminal domain › Fibrinogen binding protein N-terminal domain › NFACT_N 0.61 45.0 3.64e-01 78.7% 42.8%
4566387 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.60 47.0 4.91e-01 86.7% 95.7%
4965842 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.59 43.0 3.00e-01 78.7% 39.6%
3935058 292.2.1.5 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Polo_box_3 0.58 43.0 4.20e-01 81.3% 80.0%
3490378 331.4.1.9 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 › CPSF73-100_C 0.58 48.0 4.77e-01 94.7% 88.7%
3599152 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.57 48.0 4.03e-01 97.3% 67.1%
3317211 844.1.1.2 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR 0.57 49.0 3.74e-01 97.3% 55.3%
3519730 5.1.3.7 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › NHL 0.57 43.0 2.83e-01 82.7% 33.1%
3230791 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 41.0 3.73e-01 77.3% 81.0%
4273381 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.56 41.0 3.54e-01 78.7% 77.5%
3600669 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.56 44.0 3.90e-01 90.7% 82.5%
3888357 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 41.0 2.80e-01 82.7% 29.3%
3964807 9.7.1.2 ↗ beta barrels › Lipocalins/Streptavidin › Metalloprotease inhibitor › Metalloprotease inhibitor › PF28291 0.54 47.0 4.39e-01 98.7% 100.0%
3526347 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.54 47.0 3.30e-01 100.0% 52.0%
4451022 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 39.0 3.37e-01 77.3% 70.8%
None — 0.53 41.0 2.79e-01 84.0% 49.8%
3931562 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.53 43.0 3.17e-01 100.0% 30.7%
3884500 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.53 47.0 3.40e-01 100.0% 47.9%
4950471 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.53 39.0 4.24e-01 88.0% 100.0%
3678440 5.3.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.53 46.0 3.80e-01 100.0% 94.3%
5072222 243.6.1.0 ↗ a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain 0.52 41.0 4.13e-01 85.3% 90.7%
3335997 5.3.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › S_locus_glycop 0.52 46.0 3.84e-01 98.7% 84.6%
3626322 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 40.0 2.66e-01 85.3% 43.9%
5031812 2003.1.1.373 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › N6_N4_Mtase 0.52 41.0 2.47e-01 89.3% 98.2%
3303185 5.3.1.2 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II › B_lectin 0.52 44.0 3.58e-01 100.0% 61.9%
3392173 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.52 38.0 2.66e-01 81.3% 30.0%
4076328 10.1.1.11 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 0.50 44.0 3.15e-01 100.0% 66.8%
4634499 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.50 33.0 3.52e-01 85.3% 81.7%