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OK258140.1__UGL61382.1__X__00008

Bact-Vir

OK258140.1__UGL61382.1__X__00008

Identity

Accession:
OK258140 ↗
Kingdom:
phage

Quality

80.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_DMF5-T1

TaxID: 2886036

Cluster

View cluster (22 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-75
PDB
Domain cluster: representative
CATH (33)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 55.0 5.85e-01 98.5% 79.7%
6my0A02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.80 54.0 5.53e-01 100.0% 72.3%
2f5kA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 55.0 6.21e-01 100.0% 100.0%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 59.0 5.51e-01 100.0% 70.4%
4qucA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.74 46.0 4.94e-01 71.6% 75.0%
3pieC09 2.30.30.750 Mainly Beta › Roll › SH3 type barrels. › 0.72 65.0 5.60e-01 100.0% 65.7%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 56.0 5.34e-01 100.0% 71.8%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 56.0 5.87e-01 100.0% 93.3%
2rqrA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 55.0 4.55e-01 100.0% 47.1%
1ov3A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 54.0 5.82e-01 100.0% 98.2%
2pqhB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 52.0 5.34e-01 100.0% 83.1%
6ghmC02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 54.0 5.52e-01 100.0% 89.1%
2vgeA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.68 54.0 3.76e-01 100.0% 27.5%
1i1jB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 60.0 5.16e-01 100.0% 62.5%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.66 48.0 5.07e-01 100.0% 86.4%
3askA02 2.30.30.1150 Mainly Beta › Roll › SH3 type barrels. › 0.66 53.0 4.07e-01 100.0% 39.1%
2l3rA02 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.64 51.0 5.05e-01 100.0% 80.8%
1mv3A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 57.0 5.54e-01 100.0% 93.2%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.63 58.0 5.64e-01 100.0% 89.2%
1qypA00 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.63 41.0 4.41e-01 92.5% 80.7%
2k5fA01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.62 53.0 4.97e-01 100.0% 77.1%
1m9sA04 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.62 55.0 5.07e-01 100.0% 81.4%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.61 55.0 5.38e-01 100.0% 93.0%
3iutA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.60 54.0 3.75e-01 100.0% 34.9%
6e55A01 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.58 49.0 4.84e-01 100.0% 89.2%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 40.0 4.10e-01 100.0% 80.0%
3fvqA03 2.40.50.470 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.54 35.0 3.76e-01 91.0% 77.6%
2ivwA01 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.54 41.0 3.86e-01 82.1% 95.0%
2o07A01 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.54 39.0 4.12e-01 95.5% 89.8%
3fljA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 44.0 3.49e-01 95.5% 66.0%
3h3hB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 42.0 3.60e-01 95.5% 85.0%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.51 39.0 3.85e-01 98.5% 78.7%
2jjdF02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.50 40.0 2.72e-01 88.1% 44.7%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3214131 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.87 59.0 5.52e-01 100.0% 58.7%
5004050 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.86 55.0 5.45e-01 100.0% 62.9%
3174977 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.84 55.0 4.84e-01 100.0% 47.4%
2727964 4.1.1.105 ↗ beta barrels › SH3 › SH3 › SH3 › DUF5604 0.80 55.0 5.86e-01 100.0% 81.4%
3738641 4.1.1.102 ↗ beta barrels › SH3 › SH3 › SH3 › Tudor_3 0.80 58.0 5.59e-01 100.0% 68.0%
3251559 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.79 55.0 6.30e-01 100.0% 98.0%
5034724 4.1.1.482 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4314 0.78 57.0 6.24e-01 95.5% 94.5%
3702154 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.76 54.0 5.22e-01 100.0% 66.7%
3675120 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.75 66.0 6.05e-01 100.0% 75.3%
4120629 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.75 55.0 5.29e-01 100.0% 69.3%
3485745 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 58.0 6.15e-01 100.0% 93.3%
3585492 4.1.1.103 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12 0.74 64.0 5.37e-01 100.0% 57.3%
3191269 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.74 60.0 5.95e-01 100.0% 84.3%
3630782 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.73 61.0 4.73e-01 100.0% 42.1%
3799904 4.1.1.315 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12, XRN1_D1 0.73 64.0 3.86e-01 100.0% 15.7%
3720772 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.73 59.0 5.88e-01 100.0% 84.3%
4012002 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 60.0 5.90e-01 100.0% 84.3%
4022025 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.73 61.0 4.68e-01 100.0% 42.1%
3888226 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.72 57.0 5.53e-01 100.0% 76.0%
3185321 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.72 60.0 5.83e-01 100.0% 81.3%
3733191 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 64.0 3.91e-01 100.0% 17.1%
3932586 4.1.1.140 ↗ beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.72 54.0 4.05e-01 95.5% 33.1%
3251170 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 58.0 5.74e-01 100.0% 84.3%
3793311 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 57.0 5.98e-01 100.0% 96.7%
3741878 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.71 57.0 5.77e-01 100.0% 89.2%
3688068 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.70 63.0 4.85e-01 100.0% 48.0%
3591144 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.70 56.0 4.23e-01 98.5% 38.0%
3278698 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 63.0 5.38e-01 100.0% 81.9%
3172122 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 56.0 5.89e-01 100.0% 98.3%
4405469 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.69 55.0 4.93e-01 100.0% 62.1%
3932647 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.69 53.0 4.92e-01 100.0% 65.9%
2121553 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.68 54.0 5.34e-01 100.0% 81.4%
4505316 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 47.0 4.97e-01 100.0% 81.7%
4055974 4.1.1.248 ↗ beta barrels › SH3 › SH3 › SH3 › CABIT 0.68 57.0 4.64e-01 100.0% 49.6%
3546727 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 60.0 5.08e-01 100.0% 61.1%
3928985 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.67 54.0 4.90e-01 100.0% 65.6%
3025579 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 52.0 5.43e-01 100.0% 96.7%
509 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.66 59.0 5.53e-01 100.0% 83.1%
3707346 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 59.0 5.51e-01 100.0% 79.5%
3213653 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 59.0 5.58e-01 100.0% 92.5%
3926695 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 59.0 4.39e-01 100.0% 63.6%
3784770 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.65 59.0 5.69e-01 100.0% 88.0%
3687350 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 45.0 4.91e-01 100.0% 89.1%
3706000 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.65 58.0 5.57e-01 100.0% 88.0%
4250193 4.1.1.78 ↗ beta barrels › SH3 › SH3 › SH3 › TTD 0.65 53.0 4.86e-01 100.0% 67.8%
4422252 4.1.1.455 ↗ beta barrels › SH3 › SH3 › SH3 › DSRB 0.64 49.0 5.16e-01 100.0% 93.3%
3385654 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 58.0 4.68e-01 98.5% 64.2%
4930563 4.1.1.40 ↗ beta barrels › SH3 › SH3 › SH3 › FeoA 0.64 51.0 5.06e-01 100.0% 85.7%
4002655 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 56.0 4.44e-01 100.0% 58.6%
3733713 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.62 48.0 4.33e-01 82.1% 80.0%
3706854 219.1.1.4 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.62 54.0 3.50e-01 100.0% 28.2%
3246514 219.1.1.4 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.61 54.0 3.75e-01 100.0% 43.5%
3737837 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 50.0 5.06e-01 100.0% 90.8%
3410884 708.1.1.4 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.61 41.0 4.20e-01 95.5% 73.4%
3576622 219.1.1.4 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.61 53.0 3.39e-01 100.0% 28.4%
4201023 219.1.1.4 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.61 54.0 3.46e-01 100.0% 29.1%
3243710 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 53.0 5.21e-01 100.0% 92.9%
4020992 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.59 52.0 3.32e-01 100.0% 25.8%
3724767 219.1.1.4 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.59 51.0 3.27e-01 100.0% 26.5%
4507276 2.4.1.11 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.58 44.0 3.82e-01 83.6% 90.7%
3688421 219.1.1.4 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.58 50.0 3.15e-01 100.0% 27.1%
3281618 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.57 51.0 4.50e-01 100.0% 71.0%
4268790 2.4.1.12 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3+CysA_C_terminal 0.57 44.0 3.55e-01 83.6% 83.8%
4250478 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.57 44.0 3.63e-01 86.6% 89.2%
185990 3454.1.1.1 ↗ beta barrels › GspC HR domain/PilP-like › GspC HR domain/PilP-like › GspC HR domain/PilP-like › PilP 0.54 41.0 3.48e-01 83.6% 68.1%
5002153 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.53 40.0 3.59e-01 94.0% 56.0%
4073602 2.4.1.2 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.53 41.0 3.55e-01 86.6% 88.2%
3965322 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 44.0 3.95e-01 100.0% 96.8%