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OK258140.1__UGL61405.1__X__00031

Bact-Vir

OK258140.1__UGL61405.1__X__00031

Identity

Accession:
OK258140 ↗
Kingdom:
phage

Quality

78.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_DMF5-T1

TaxID: 2886036

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-101
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ckkA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.85 47.0 6.22e-01 75.5% 98.1%
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.85 48.0 6.36e-01 74.5% 100.0%
3lx7A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 39.0 5.51e-01 78.7% 100.0%
1vx7N01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.74 44.0 4.69e-01 87.2% 67.1%
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.73 41.0 4.69e-01 74.5% 75.4%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 45.0 4.30e-01 77.7% 56.5%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 45.0 5.15e-01 80.9% 89.7%
5zwzA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 40.0 4.62e-01 72.3% 80.0%
3meuB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 41.0 4.55e-01 75.5% 77.0%
2creA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 45.0 5.01e-01 80.9% 90.1%
2kdsA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.67 40.0 4.24e-01 87.2% 66.3%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 42.0 4.81e-01 81.9% 85.7%
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 46.0 5.07e-01 78.7% 88.2%
1y71A00 2.30.30.430 Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain 0.65 41.0 3.87e-01 76.6% 55.0%
5f3yA05 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 43.0 4.74e-01 79.8% 84.4%
1rk6A03 3.30.1490.130 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › D-aminoacylase. Domain 3 0.64 31.0 3.90e-01 73.4% 77.2%
2dlpA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 41.0 4.36e-01 79.8% 72.9%
1whlA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.62 46.0 4.63e-01 77.7% 84.2%
2xdbA00 3.10.129.130 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › 0.60 45.0 3.72e-01 78.7% 63.6%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.60 40.0 4.72e-01 75.5% 100.0%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.58 41.0 4.58e-01 90.4% 89.6%
1ixdA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.57 43.0 4.17e-01 78.7% 72.1%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 29.0 3.24e-01 75.5% 62.2%
3vsfA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 38.0 3.37e-01 74.5% 99.3%
4m7dA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 32.0 3.62e-01 81.9% 84.6%
8badA01 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.52 39.0 3.42e-01 79.8% 100.0%
2daqA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.51 42.0 4.04e-01 89.4% 89.1%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3558774 4.1.1.104 ↗ beta barrels › SH3 › SH3 › SH3 › KN17_SH3 0.85 46.0 5.73e-01 74.5% 85.0%
4975193 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.76 43.0 4.43e-01 79.8% 59.6%
4808338 4.1.1.24 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.76 44.0 3.62e-01 83.0% 35.5%
3258767 4.1.1.24 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.75 44.0 3.68e-01 87.2% 37.3%
4261791 4.1.1.24 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.74 44.0 3.70e-01 87.2% 38.6%
3881192 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 45.0 3.63e-01 77.7% 34.1%
2642957 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 44.0 4.75e-01 87.2% 70.4%
3598271 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 44.0 3.53e-01 87.2% 33.5%
4943151 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 44.0 4.51e-01 87.2% 64.4%
3619619 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 40.0 4.64e-01 75.5% 75.7%
3482225 4.1.1.300 ↗ beta barrels › SH3 › SH3 › SH3 › KN17_SH3, SH3_KIN17_C 0.70 50.0 4.46e-01 85.1% 53.8%
3928711 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 39.0 4.15e-01 77.7% 62.4%
4881976 4.1.1.3 ↗ beta barrels › SH3 › SH3 › SH3 › KOW 0.69 37.0 4.10e-01 74.5% 64.9%
3518287 4.1.1.347 ↗ beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.66 52.0 4.82e-01 85.1% 67.0%
4033907 4.1.1.280 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4176 0.66 46.0 4.58e-01 87.2% 70.5%
4870495 304.169.1.1 ↗ a+b two layers › Alpha-beta plaits › RspWYL1 C-terminal domain › RspWYL1 C-terminal domain › WYL 0.66 43.0 4.14e-01 77.7% 58.3%
3702850 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 46.0 4.00e-01 73.4% 68.6%
3662072 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 40.0 3.69e-01 85.1% 47.5%
552 4.1.1.61 ↗ beta barrels › SH3 › SH3 › SH3 › KapB 0.65 41.0 3.87e-01 76.6% 55.0%
3879132 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 44.0 4.93e-01 81.9% 89.3%
3583602 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 50.0 5.26e-01 83.0% 91.8%
3279083 4.6.1.7 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PF26205 0.64 41.0 4.62e-01 73.4% 82.7%
3867384 4.1.1.50 ↗ beta barrels › SH3 › SH3 › SH3 › MIB_HERC2 0.63 47.0 5.04e-01 84.0% 90.0%
3834563 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.63 41.0 4.48e-01 77.7% 78.8%
3931419 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 40.0 4.24e-01 79.8% 71.8%
158911 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.60 43.0 4.30e-01 80.9% 72.2%
3514524 4.1.1.235 ↗ beta barrels › SH3 › SH3 › SH3 › KOW1_SPT5 0.60 46.0 3.93e-01 79.8% 79.3%
3515127 4.1.1.280 ↗ beta barrels › SH3 › SH3 › SH3 › DUF4176 0.60 48.0 4.85e-01 86.2% 85.3%
3715486 4.1.1.235 ↗ beta barrels › SH3 › SH3 › SH3 › KOW1_SPT5 0.59 44.0 3.90e-01 77.7% 95.4%
3712122 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.57 36.0 3.77e-01 75.5% 69.4%
3557649 4.8.1.20 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PWP3A-B_N 0.56 43.0 4.15e-01 79.8% 92.4%
3998955 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 41.0 3.93e-01 79.8% 90.9%
3629316 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 41.0 4.01e-01 80.9% 84.0%
3273925 4.1.1.85 ↗ beta barrels › SH3 › SH3 › SH3 › MTR4_beta-barrel 0.51 42.0 3.77e-01 87.2% 76.8%