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OK274245.1__UCR91208.1__X__00053

Bact-Vir

OK274245.1__UCR91208.1__X__00053

Identity

Accession:
OK274245 ↗
Kingdom:
phage

Quality

87.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autotranscriptaviridae› Serkorvirus› Ralstonia_phage_RpT1

TaxID: 2878557

Cluster

View cluster (20 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-139
PDB
Domain cluster: rep: NC_028850.1__YP_009203163.1__AVU16_gp07__00007__D5-127
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF23780.2 best S-AdoMet_lyase 89.4 2.80e-25 99.3% 99.2%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4bd9B01 4.10.410.10 Few Secondary Structures › Irregular › Factor Xa Inhibitor › Pancreatic trypsin inhibitor Kunitz domain 0.61 22.0 3.42e-01 88.9% 79.6%
1pbuA00 3.30.70.1010 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Translation elongation factor EF1B, gamma chain, conserved domain 0.60 45.0 4.26e-01 99.3% 64.8%
4xmqA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.59 41.0 4.22e-01 88.9% 73.7%
2pn5A03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 28.0 3.17e-01 74.1% 60.0%
1m55A00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.57 50.0 4.48e-01 97.8% 96.4%
2govA01 3.20.80.10 Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain 0.56 50.0 4.66e-01 100.0% 87.3%
1w96C04 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.54 36.0 2.95e-01 77.0% 35.5%
2bvfA03 3.40.462.20 Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › 0.53 47.0 4.08e-01 97.0% 79.5%
6j09A04 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.53 30.0 3.71e-01 72.6% 94.8%
2mj0A00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.52 25.0 3.24e-01 92.6% 86.4%
2a2cA01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.52 41.0 3.53e-01 84.4% 95.4%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 36.0 3.50e-01 83.7% 64.6%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 42.0 3.14e-01 88.9% 68.6%
2aj4B01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.51 42.0 3.50e-01 91.1% 73.0%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3497180 304.46.1.1 ↗ a+b two layers › Alpha-beta plaits › eEF1-gamma domain › eEF1-gamma domain › EF1G 0.62 44.0 4.27e-01 96.3% 63.9%
1447950 3925.1.1.1 ↗ a+b two layers › hypothetical protein BPSL2088 › hypothetical protein BPSL2088 › hypothetical protein BPSL2088 › Imm52 0.60 50.0 4.18e-01 90.4% 99.2%
4959045 304.8.1.81 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › REP_ORF2-G2P 0.59 48.0 4.65e-01 95.6% 78.0%
3377701 304.8.1.23 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N 0.58 51.0 4.39e-01 94.8% 86.7%
4477176 7502.1.1.0 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.57 36.0 4.38e-01 94.1% 98.8%
3683205 304.55.1.20 ↗ a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › Helitron_like_N, REP_ORF2-G2P 0.57 49.0 4.57e-01 94.8% 83.8%
None — 0.56 49.0 4.05e-01 94.8% 82.4%
3615464 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.56 43.0 4.68e-01 97.8% 99.1%
3729880 390.1.1.0 ↗ few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.54 31.0 3.42e-01 94.8% 68.6%
4469156 886.1.1.2 ↗ a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › GyrI-like 0.54 49.0 4.70e-01 100.0% 92.3%
3414928 382.1.1.6 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › QVR 0.53 30.0 3.57e-01 91.9% 84.1%
3787053 224.1.1.1 ↗ a+b three layers › Gelsolin-like › Gelsolin-like › Gelsolin-like › Cofilin_ADF 0.52 37.0 3.66e-01 100.0% 69.3%
3372782 304.8.1.64 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Helitron_like_N, REP_ORF2-G2P 0.52 46.0 3.99e-01 96.3% 84.4%
5030533 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 34.0 4.00e-01 94.1% 100.0%
4934084 2011.2.1.7 ↗ a/b three-layered sandwiches › Phosphorylase/hydrolase-like › Peptidyl-tRNA hydrolase-like › Peptidyl-tRNA hydrolase-like › PAC2 0.51 44.0 3.68e-01 93.3% 89.4%
5052845 886.1.1.0 ↗ a+b duplicates or obligate multimers › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain › Probable bacterial effector-binding domain 0.51 46.0 4.52e-01 100.0% 91.7%
3924227 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 26.0 3.13e-01 80.7% 72.2%
4309132 304.6.1.0 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain 0.51 44.0 3.67e-01 95.6% 67.9%
4222843 304.6.1.3 ↗ a+b two layers › Alpha-beta plaits › FAD-linked oxidases, C-terminal domain › FAD-linked oxidases, C-terminal domain › BBE 0.50 43.0 3.52e-01 97.0% 65.2%