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OK283305.1__UFK26604.1__X__00006

Bact-Vir

OK283305.1__UFK26604.1__X__00006

Identity

Accession:
OK283305 ↗
Kingdom:
phage

Quality

74.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Roseobacter_phage_RDJL3

TaxID: 2880884

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 9-47
PDB
Domain cluster: representative
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a62A01 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.79 63.0 6.07e-01 100.0% 78.3%
3tixA02 6.10.140.1690 Special › Helix non-globular › Helix Hairpins › 0.76 51.0 4.07e-01 71.8% 55.7%
1mdyA00 4.10.280.10 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain 0.75 56.0 4.74e-01 100.0% 48.5%
1egdA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.73 62.0 4.27e-01 100.0% 63.1%
2e5yA02 1.20.5.440 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › ATP synthase delta/epsilon subunit, C-terminal domain 0.71 48.0 4.64e-01 71.8% 86.7%
2oyhA00 1.20.5.50 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.69 47.0 4.07e-01 71.8% 85.9%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.68 46.0 3.15e-01 71.8% 25.5%
1dc1A02 1.10.238.90 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Restriction endonuclease BsobI, helical domain 0.67 55.0 4.30e-01 94.9% 42.0%
2cazC00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.67 46.0 4.00e-01 71.8% 59.4%
4id0A02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.67 58.0 4.15e-01 100.0% 67.0%
4bzaA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.66 50.0 4.34e-01 89.7% 66.2%
1xfiA02 1.20.1700.10 Mainly Alpha › Up-down Bundle › AF1104-like › AF1104-like 0.65 55.0 4.29e-01 100.0% 78.9%
4v19K02 1.10.10.250 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Ribosomal protein L11/L12, C-terminal domain 0.59 46.0 3.79e-01 89.7% 92.0%
1d8cA02 2.170.170.11 Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain 0.56 41.0 2.96e-01 82.1% 74.2%
4ceiA03 6.10.250.2380 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.56 47.0 3.47e-01 100.0% 58.0%
6ifsB02 1.10.8.100 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › rRNA adenine dimethylase, C-terminal domain 0.54 45.0 3.76e-01 97.4% 76.1%
4n81A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.51 42.0 2.79e-01 92.3% 25.7%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3595101 3718.1.1.0 ↗ alpha bundles › Flagellar protein fliT › Flagellar protein fliT › Flagellar protein fliT 0.74 53.0 3.82e-01 76.9% 28.2%
3690970 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.74 51.0 3.02e-01 74.4% 10.6%
3372833 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.70 50.0 4.58e-01 79.5% 56.4%
4416267 192.6.1.1 ↗ alpha bundles › Long alpha-hairpin › Epsilon subunit of F1F0-ATP synthase C-terminal domain › Epsilon subunit of F1F0-ATP synthase C-terminal domain › ATP-synt_DE 0.70 47.0 4.39e-01 71.8% 72.0%
3433018 904.1.1.0 ↗ few secondary structure elements › B-box zinc-binding domain-like › B-box zinc-binding domain › B-box zinc-binding domain 0.69 47.0 4.29e-01 71.8% 60.4%
3846390 2008.1.1.84 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › Rab15_effector 0.66 50.0 3.13e-01 84.6% 17.2%
4948520 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.64 54.0 3.08e-01 97.4% 70.1%
4590279 5001.1.1.1 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 0.62 50.0 3.04e-01 100.0% 60.6%
4678343 7566.1.1.1 ↗ a/b three-layered sandwiches › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › HflX family GTPase N-terminal domain › GTP-bdg_N,GTP-bdg_M 0.61 47.0 3.26e-01 100.0% 51.4%
3175397 105.1.1.62 ↗ alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › bHLH_INO2 0.60 52.0 4.23e-01 100.0% 52.0%
4079732 601.19.1.0 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein 0.60 49.0 3.30e-01 97.4% 70.9%
3411080 603.1.1.101 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins › 7tm_6 0.56 48.0 2.84e-01 97.4% 61.0%
4188102 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.56 48.0 4.05e-01 100.0% 75.7%
3821463 2004.1.1.33 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C,RecQ_Zn_bind 0.53 41.0 2.64e-01 92.3% 49.0%
D2 medium residues 52-106
PDB
Domain cluster: rep: ON189045.1__URA07023.1__Elanor_BL40055__00055__D58-109