Back to structures

OK283305.1__UFK26612.1__X__00014

Bact-Vir

OK283305.1__UFK26612.1__X__00014

Identity

Accession:
OK283305 ↗
Kingdom:
phage

Quality

58.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 78-137
PDB
Domain cluster: representative
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.72 50.0 4.12e-01 73.3% 46.8%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.71 50.0 4.26e-01 73.3% 60.4%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.71 48.0 5.06e-01 71.7% 94.5%
2f4nB02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.68 46.0 3.94e-01 70.0% 68.1%
1nbwA02 3.90.470.30 Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Coenzyme B12-Dependent Enzyme linker domain 0.68 44.0 3.32e-01 71.7% 28.0%
4kncA02 2.60.120.1380 Mainly Beta › Sandwich › Jelly Rolls › C-terminal carbohydrate-binding module 0.67 47.0 3.74e-01 73.3% 44.4%
3b8fB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.67 45.0 3.47e-01 71.7% 35.9%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.67 46.0 4.73e-01 73.3% 94.8%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.66 45.0 4.36e-01 71.7% 71.2%
5z6pA01 2.60.120.430 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding lectin 0.65 46.0 3.27e-01 75.0% 44.9%
2fr5A00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.64 46.0 3.59e-01 76.7% 62.5%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 44.0 4.28e-01 71.7% 71.2%
3glkA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.64 43.0 4.39e-01 71.7% 72.9%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 37.0 3.14e-01 71.7% 33.7%
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.63 44.0 4.54e-01 98.3% 80.7%
2hfqA00 3.10.510.10 Alpha Beta › Roll › NE1680-like fold › NE1680-like 0.62 51.0 4.59e-01 91.7% 96.5%
1vjfA00 3.90.960.10 Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain 0.62 53.0 3.97e-01 100.0% 44.6%
3kl9A02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.62 42.0 3.93e-01 70.0% 67.6%
2pwyA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.62 41.0 4.25e-01 70.0% 100.0%
1sfeA01 3.30.160.70 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain 0.62 52.0 4.69e-01 93.3% 82.7%
4uzgA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 41.0 3.07e-01 71.7% 39.7%
1o54A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.61 42.0 4.05e-01 75.0% 80.6%
1t94B02 3.30.70.270 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain 0.59 42.0 3.45e-01 76.7% 87.4%
1knxE02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 50.0 3.70e-01 100.0% 53.7%
3pjyA00 2.60.120.1140 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF192 0.59 46.0 3.62e-01 93.3% 40.3%
3vzbB02 2.60.200.40 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.58 42.0 2.95e-01 78.3% 98.0%
4e6zA01 3.40.1350.100 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.57 46.0 3.98e-01 98.3% 75.2%
2i45D00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 38.0 3.26e-01 70.0% 53.5%
5jtwA03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 40.0 3.27e-01 76.7% 58.3%
1wmdA02 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.57 38.0 3.07e-01 70.0% 76.1%
1khbA03 3.90.228.20 Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › 0.57 48.0 3.22e-01 100.0% 32.3%
4e6zA02 3.40.1350.100 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.57 47.0 4.23e-01 98.3% 74.2%
2qsdB02 3.50.100.10 Alpha Beta › 3-Layer(bba) Sandwich › protein il1583 fold › protein il1583 domain 0.57 47.0 4.32e-01 93.3% 75.6%
2kqaA00 2.40.40.10 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain 0.56 47.0 3.81e-01 95.0% 50.8%
8ezmH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 39.0 3.29e-01 76.7% 66.1%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 37.0 3.11e-01 70.0% 47.4%
1ycoA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.56 41.0 2.80e-01 85.0% 91.7%
3d3kA00 3.40.50.10260 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › YjeF N-terminal domain 0.55 42.0 2.93e-01 86.7% 46.8%
2dk6A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.55 38.0 3.42e-01 75.0% 81.9%
2piaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 39.0 3.38e-01 78.3% 59.6%
3tqfA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.55 46.0 3.49e-01 100.0% 57.0%
3ir9A02 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.54 40.0 3.23e-01 80.0% 43.3%
3loiA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 39.0 2.87e-01 76.7% 49.4%
5cecA02 3.50.80.20 Alpha Beta › 3-Layer(bba) Sandwich › D-tyrosyl-trna(Tyr) Deacylase; Chain: A; › D-Ala-D-Ala carboxypeptidase C, peptidase S13 0.52 43.0 3.32e-01 100.0% 90.8%
6jifA02 3.20.10.10 Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 0.52 43.0 3.20e-01 100.0% 36.3%
5zi7A02 3.30.2010.30 Alpha Beta › 2-Layer Sandwich › Zincin-like › 0.52 42.0 3.85e-01 100.0% 67.1%
1mgpA01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 36.0 2.85e-01 80.0% 85.8%
2lw3A00 2.60.40.2880 Mainly Beta › Sandwich › Immunoglobulin-like › MmpS1-5, C-terminal soluble domain 0.51 33.0 2.97e-01 70.0% 44.4%
3nyiB01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 37.0 2.77e-01 78.3% 40.1%
4uejA02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.50 38.0 3.11e-01 90.0% 73.9%
1g25A00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.50 35.0 3.51e-01 76.7% 72.3%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.50 44.0 3.96e-01 100.0% 79.1%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3969006 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.74 51.0 5.63e-01 71.7% 100.0%
4301405 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.74 65.0 4.73e-01 100.0% 54.1%
4004704 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.74 50.0 5.58e-01 71.7% 100.0%
4030871 3115.6.1.1 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY 0.73 64.0 6.11e-01 98.3% 98.6%
4886584 3115.6.1.1 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY 0.73 64.0 6.11e-01 98.3% 98.6%
4995671 3115.1.1.12 a+b two layers › GP2-like › RplX-like › RplX-like › PF30567 0.73 52.0 5.53e-01 75.0% 96.0%
3968122 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.72 49.0 5.34e-01 70.0% 97.8%
3216210 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.71 48.0 5.11e-01 70.0% 98.0%
4007508 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.71 49.0 5.25e-01 73.3% 92.0%
3987406 3115.6.1.1 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › RpoY 0.70 58.0 5.46e-01 96.7% 100.0%
25624 4.1.1.45 beta barrels › SH3 › SH3 › SH3 › DUF903 0.69 46.0 4.95e-01 70.0% 98.1%
5001166 301.1.1.2 a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 0.69 48.0 3.77e-01 75.0% 39.3%
4400642 4.1.1.257 beta barrels › SH3 › SH3 › SH3 › Flag1_repress 0.67 45.0 4.01e-01 70.0% 56.5%
3975705 3115.6.1.0 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon 0.67 47.0 5.02e-01 73.3% 90.0%
3373154 3397.1.1.0 a+b complex topology › Tic22 › Tic22 › Tic22 0.67 58.0 5.32e-01 100.0% 83.7%
5027750 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 47.0 4.90e-01 75.0% 94.5%
4359892 4.1.1.96 beta barrels › SH3 › SH3 › SH3 › Hfq 0.66 45.0 4.09e-01 71.7% 60.0%
3354546 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.66 57.0 4.20e-01 100.0% 46.1%
4009311 4187.2.1.0 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.66 44.0 4.32e-01 70.0% 70.8%
3284797 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.66 55.0 4.23e-01 100.0% 47.7%
4123180 4.1.1.96 beta barrels › SH3 › SH3 › SH3 › Hfq 0.65 45.0 4.16e-01 71.7% 62.7%
4658938 4.1.1.96 beta barrels › SH3 › SH3 › SH3 › Hfq 0.65 45.0 3.90e-01 71.7% 52.2%
1002524 358.3.1.0 a+b complex topology › SRCR-like › Putative uncharacterized protein TTHA0547 › Putative uncharacterized protein TTHA0547 0.65 55.0 4.75e-01 100.0% 72.3%
4664972 299.1.1.0 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain 0.65 56.0 4.26e-01 100.0% 50.7%
3958896 4187.2.1.0 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.64 43.0 4.35e-01 70.0% 75.0%
3412337 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 39.0 3.59e-01 71.7% 45.0%
3420298 2487.1.1.7 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" › PA 0.64 47.0 3.63e-01 81.7% 69.0%
4178120 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.64 54.0 4.16e-01 100.0% 49.3%
4072161 299.1.1.1 a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.63 54.0 4.05e-01 100.0% 46.9%
3520265 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.61 44.0 3.37e-01 76.7% 66.2%
5012695 2004.1.2.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain 0.60 52.0 3.68e-01 100.0% 55.5%
4026408 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.60 41.0 3.46e-01 70.0% 54.0%
4972022 2004.1.2.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain 0.59 50.0 3.14e-01 100.0% 44.5%
4958689 821.1.1.14 a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF2797 0.59 45.0 4.57e-01 88.3% 95.0%
4039738 284.1.1.4 a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.59 41.0 3.73e-01 73.3% 82.5%
3292295 221.1.1.4 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 0.58 43.0 3.76e-01 80.0% 81.1%
3391921 508.1.1.0 a+b three layers › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain › Protein interacting with HSP90 1 (Pih1) N-terminal domain 0.57 45.0 3.59e-01 93.3% 78.6%
3315163 3125.1.1.1 alpha arrays › Asl3597 › Asl3597 › Asl3597 › CRR7 0.56 38.0 3.61e-01 71.7% 100.0%
4188115 109.4.1.1310 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_TRIP12_N 0.56 37.0 2.09e-01 70.0% 8.8%
5052172 247.1.1.1 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Lactamase_B 0.56 38.0 2.44e-01 71.7% 77.2%
3925464 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 38.0 3.49e-01 71.7% 92.5%
3673352 2487.1.1.0 a/b three-layered sandwiches › "The ""swivelling"" beta/beta/alpha domains" › "The ""swivelling"" beta/beta/alpha domain" › "The ""swivelling"" beta/beta/alpha domain" 0.55 41.0 3.35e-01 85.0% 85.4%
5057619 2004.1.2.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › PEP carboxykinase catalytic C-terminal domain 0.55 47.0 3.22e-01 100.0% 50.8%
4223138 10.32.1.22 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CFA20_dom 0.55 46.0 3.29e-01 98.3% 62.9%
4944714 304.139.1.2 a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › RAMPs 0.54 43.0 2.92e-01 96.7% 49.3%
4096819 284.1.1.4 a+b two layers › FKBP-like › FKBP-like › FKBP-like › GreA_GreB 0.54 37.0 3.34e-01 71.7% 80.0%
3512155 560.1.1.3 few secondary structure elements › H-NS histone-like proteins, C-terminal domain › H-NS histone-like proteins, C-terminal domain › H-NS histone-like proteins, C-terminal domain › DUF5648 0.52 45.0 3.88e-01 98.3% 91.6%
4578190 2002.1.1.42 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › A_deaminase,A_deaminase_N 0.51 40.0 2.43e-01 88.3% 67.8%
1937230 2010.1.1.1 a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.51 37.0 2.76e-01 78.3% 39.4%
4132290 210.1.2.1 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › Penicil_amidase 0.50 41.0 2.37e-01 98.3% 87.4%
3955858 316.1.1.0 a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase 0.50 38.0 2.81e-01 83.3% 90.3%
4996927 7518.1.1.1 a/b three-layered sandwiches › PK C-terminal domain-like › PK C-terminal domain-like › PK C-terminal domain-like › PK_C 0.50 37.0 2.69e-01 88.3% 69.8%
D2 medium residues 1-66
PDB