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OK283305.1__UFK26621.1__X__00023

Bact-Vir

OK283305.1__UFK26621.1__X__00023

Identity

Accession:
OK283305 ↗
Kingdom:
phage

Quality

88.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Roseobacter_phage_RDJL3

TaxID: 2880884

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-188
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF16473.12 best Rv2179c-like 107.1 1.30e-30 98.4% 96.0%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xriA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.76 69.0 6.71e-01 100.0% 87.3%
7pbkA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.59 53.0 4.95e-01 100.0% 78.4%
1x9mA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.58 53.0 4.92e-01 100.0% 79.6%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5081840 2484.1.1.13 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.79 68.0 6.56e-01 100.0% 80.8%
2810987 2484.1.1.20 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_A_exo1 0.59 53.0 5.16e-01 100.0% 86.6%
3699757 632.18.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 0.56 21.0 3.34e-01 87.2% 90.0%
4096365 2484.1.1.40 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RuvX 0.55 41.0 4.58e-01 98.9% 96.7%
3608731 3949.1.1.0 ↗ alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain 0.53 20.0 3.21e-01 87.2% 90.0%
3708804 2484.1.1.167 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › CHAT 0.52 40.0 4.15e-01 81.8% 93.7%
D2 high residues 196-260
PDB
Domain cluster: rep: NC_028988.1__YP_009216561.1__AVU67_gp23__00023__D18-98