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OK283305.1__UFK26630.1__X__00032

Bact-Vir

OK283305.1__UFK26630.1__X__00032

Identity

Accession:
OK283305 ↗
Kingdom:
phage

Quality

64.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Roseobacter_phage_RDJL3

TaxID: 2880884

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-62
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3zxjA01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.66 45.0 2.89e-01 72.6% 54.8%
4dsdA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.64 45.0 3.65e-01 75.8% 94.4%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.62 42.0 2.76e-01 72.6% 39.2%
2l5qA01 2.30.30.730 Mainly Beta › Roll › SH3 type barrels. › 0.62 42.0 4.54e-01 72.6% 100.0%
4bt2A01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.61 41.0 3.45e-01 71.0% 68.4%
1orvA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.59 46.0 2.81e-01 88.7% 51.1%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.59 40.0 4.09e-01 74.2% 98.4%
1xv2C01 3.30.1330.80 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Hypothetical protein, similar to alpha- acetolactate decarboxylase; domain 2 0.57 39.0 3.27e-01 71.0% 71.2%
4by6B00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.57 40.0 3.03e-01 75.8% 39.2%
6e20A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 39.0 3.14e-01 74.2% 93.9%
1zyiA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 38.0 3.20e-01 71.0% 86.2%
1hlcA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 39.0 3.16e-01 74.2% 93.8%
2j8gA03 2.20.120.10 Mainly Beta › Single Sheet › Multimodular pneumococcal cell wall endolysin, domain 3 › Multimodular pneumococcal cell wall endolysin, domain 3 0.54 38.0 3.87e-01 74.2% 93.1%
1a78A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 38.0 3.02e-01 74.2% 92.5%
3ol0B00 6.20.90.30 Special › Other non-globular › SH3 type barrels. › 0.52 31.0 3.67e-01 74.2% 90.2%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.51 35.0 2.93e-01 71.0% 67.2%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3623890 4.1.1.322 ↗ beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.68 46.0 4.16e-01 71.0% 70.6%
3669050 310.2.1.48 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF › TMEM62_C 0.65 44.0 2.95e-01 71.0% 55.8%
4949848 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.64 43.0 4.51e-01 71.0% 92.7%
3668886 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.64 43.0 3.44e-01 71.0% 63.8%
3350469 604.1.1.164 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › TMEM62_C 0.63 42.0 2.89e-01 71.0% 59.6%
3177591 633.23.1.9 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › SUR7 0.62 42.0 2.89e-01 71.0% 58.7%
3577864 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.58 44.0 4.04e-01 83.9% 71.8%
3229069 633.23.1.5 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like 0.58 49.0 3.51e-01 100.0% 81.9%
4428913 5.1.4.26 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Reg_prop 0.57 46.0 3.02e-01 93.5% 48.9%
5058457 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.56 38.0 3.79e-01 72.6% 84.6%
5081442 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.55 37.0 3.67e-01 72.6% 82.9%
4932434 4.1.1.364 ↗ beta barrels › SH3 › SH3 › SH3 › GatD_N 0.55 38.0 3.68e-01 72.6% 70.0%
3939513 633.23.1.5 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like 0.55 37.0 2.51e-01 71.0% 54.5%
3994170 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 41.0 2.99e-01 85.5% 66.3%
4948433 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.54 37.0 3.68e-01 74.2% 85.3%
4980003 210.1.2.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain 0.53 36.0 2.17e-01 74.2% 23.4%
3374859 604.6.1.47 ↗ alpha bundles › Spectrin repeat-like › GAT-like domain › GAT-like domain › TMEM62_C 0.53 43.0 3.01e-01 98.4% 70.0%
4949974 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 41.0 2.74e-01 91.9% 72.6%
3230548 633.23.1.5 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › Clc-like 0.51 42.0 3.01e-01 100.0% 78.1%
3943474 2003.1.7.5 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NagB/RpiA/CoA transferase-like › 5-FTHF_cyc-lig 0.50 39.0 2.91e-01 93.5% 78.3%