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OK283306.1__UFK26754.1__X__00074

Bact-Vir

OK283306.1__UFK26754.1__X__00074

Identity

Accession:
OK283306 ↗
Kingdom:
phage

Quality

68.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-111
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3a27A00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.73 42.0 3.27e-01 83.2% 27.4%
7dluA03 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.71 45.0 5.10e-01 90.7% 86.1%
2cc6A00 3.30.1660.10 Alpha Beta › 2-Layer Sandwich › Dodecin subunit-like › Flavin-binding protein dodecin 0.65 38.0 4.68e-01 83.2% 96.9%
1bdfA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.63 42.0 4.24e-01 90.7% 67.9%
2lxiA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.62 44.0 4.72e-01 100.0% 85.7%
6urtA02 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 41.0 4.44e-01 90.7% 84.1%
2cz4A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 45.0 4.70e-01 100.0% 83.8%
6mroA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.61 37.0 3.00e-01 79.4% 33.0%
7o4xA01 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 43.0 4.52e-01 99.1% 80.8%
1y7pB01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 41.0 4.60e-01 100.0% 93.8%
1j4wA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.60 37.0 4.36e-01 91.6% 90.5%
3ue2A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.60 45.0 4.91e-01 100.0% 97.7%
4noiA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.60 40.0 4.09e-01 90.7% 70.9%
2cpiA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.60 43.0 4.84e-01 98.1% 100.0%
1o51A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 42.0 4.53e-01 100.0% 87.6%
4z9eA00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.59 34.0 3.74e-01 80.4% 70.6%
3uiuA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 33.0 3.52e-01 84.1% 61.9%
3rrkA01 3.30.70.2170 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 38.0 4.46e-01 100.0% 98.6%
1j2vA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 42.0 4.33e-01 99.1% 80.2%
2ldyA01 3.30.70.1820 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › L1 transposable element, RRM domain 0.58 49.0 5.07e-01 100.0% 100.0%
1p1lA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 42.0 4.30e-01 100.0% 79.4%
4bbyA05 3.30.300.330 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.58 40.0 4.00e-01 92.5% 70.4%
1uw4A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.58 42.0 4.54e-01 100.0% 91.2%
2nyiA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 42.0 4.46e-01 98.1% 90.0%
1vm0A00 3.30.110.20 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Alba-like domain 0.57 34.0 3.68e-01 86.9% 67.7%
2w40A02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 41.0 3.17e-01 74.8% 87.9%
3ahpA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 42.0 4.28e-01 100.0% 78.3%
3ibwA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.57 38.0 4.30e-01 100.0% 92.4%
1a7gE00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 38.0 4.28e-01 100.0% 91.5%
6wubf01 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.56 44.0 4.70e-01 100.0% 98.9%
1rtzA00 3.30.70.560 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK 0.55 49.0 4.39e-01 100.0% 71.7%
4fvmA02 3.30.70.2820 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 44.0 4.50e-01 99.1% 92.2%
2go8A01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 34.0 3.89e-01 100.0% 91.9%
2mdaA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 37.0 3.94e-01 100.0% 82.1%
2yq1C00 3.30.70.390 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain 0.52 39.0 3.71e-01 100.0% 64.9%
2hfvA01 3.30.70.790 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain 0.52 35.0 3.90e-01 100.0% 93.5%
5w2fA01 3.30.780.10 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › SUI1-like domain 0.52 35.0 3.80e-01 98.1% 84.9%
1qf6A02 3.30.980.10 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 0.52 39.0 3.95e-01 79.4% 89.6%
4qclA02 3.30.70.2820 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 46.0 4.55e-01 100.0% 92.8%
4mt1A06 3.30.70.1430 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.51 43.0 4.46e-01 100.0% 100.0%
2ypyA00 3.30.70.390 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain 0.51 38.0 3.57e-01 99.1% 63.4%
6ruiB07 2.40.50.150 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II, Rpb2 subunit, wall domain 0.50 38.0 3.67e-01 81.3% 85.7%
ECOD (68)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3663444 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.76 48.0 4.53e-01 92.5% 54.4%
3829654 387.1.5.7 few secondary structure elements › omega toxin-like › omega toxin-related › Scorpion toxin-like › SCRL 0.70 39.0 4.98e-01 80.4% 100.0%
4970335 304.39.1.1 a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain › MS_channel_3rd 0.69 44.0 4.79e-01 90.7% 77.8%
3520543 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.67 46.0 4.93e-01 100.0% 82.2%
3219815 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.65 46.0 5.18e-01 100.0% 97.5%
3450246 304.114.1.2 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › POL3_N 0.65 44.0 5.04e-01 78.5% 98.7%
3930833 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.64 44.0 5.00e-01 100.0% 95.0%
4961278 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.64 44.0 4.79e-01 100.0% 86.4%
4486890 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.64 47.0 4.67e-01 100.0% 74.5%
4927015 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.64 44.0 5.01e-01 100.0% 96.2%
3597930 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.64 44.0 4.81e-01 100.0% 85.6%
3995251 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.63 43.0 4.80e-01 100.0% 93.8%
3952856 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.63 45.0 4.64e-01 100.0% 80.0%
4962586 304.8.1.8 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.62 43.0 4.82e-01 100.0% 92.8%
5047519 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.62 43.0 4.82e-01 100.0% 95.0%
3388031 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.62 43.0 4.80e-01 100.0% 95.0%
3808450 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.62 48.0 4.95e-01 100.0% 87.0%
3698177 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.62 49.0 4.82e-01 100.0% 78.3%
5026312 304.8.1.8 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.62 42.0 4.76e-01 100.0% 95.0%
3488149 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.62 44.0 4.87e-01 100.0% 94.1%
3691535 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.62 46.0 4.64e-01 100.0% 77.3%
5039437 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.61 43.0 4.78e-01 100.0% 94.1%
3657954 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.61 46.0 4.48e-01 100.0% 73.9%
3744913 304.8.1.15 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › TH_ACT 0.60 42.0 4.43e-01 100.0% 81.1%
3919711 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.60 46.0 3.57e-01 100.0% 36.6%
4004140 389.4.1.7 few secondary structure elements › EGF-like › Fibulin-4 EGF-like 1 domain › Fibulin-4 EGF-like 1 domain › TIL_2 0.60 36.0 4.34e-01 82.2% 91.4%
4479772 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.60 45.0 3.44e-01 100.0% 33.3%
3613897 304.44.1.0 a+b two layers › Alpha-beta plaits › Ribosomal protein S10 › Ribosomal protein S10 0.60 34.0 4.05e-01 85.0% 89.2%
3546340 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.60 45.0 4.35e-01 100.0% 69.4%
3564603 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.60 47.0 4.94e-01 100.0% 93.7%
3250928 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.60 43.0 4.80e-01 100.0% 100.0%
3472646 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.60 49.0 4.95e-01 100.0% 91.4%
3504328 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.60 42.0 4.72e-01 100.0% 98.8%
4567458 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.59 40.0 4.00e-01 90.7% 65.2%
5011411 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 42.0 4.65e-01 100.0% 94.0%
5054484 304.11.1.0 a+b two layers › Alpha-beta plaits › Probable ACP-binding domain of malonyl-CoA ACP transacylase › Probable ACP-binding domain of malonyl-CoA ACP transacylase 0.59 36.0 4.28e-01 99.1% 92.9%
3177336 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 44.0 4.50e-01 100.0% 81.0%
3608853 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.59 44.0 3.81e-01 100.0% 50.9%
3661686 304.114.1.2 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › POL3_N 0.59 52.0 5.25e-01 98.1% 99.0%
3903912 304.8.1.15 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › TH_ACT 0.58 41.0 4.12e-01 100.0% 70.9%
3964891 304.8.1.8 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_4 0.58 42.0 4.62e-01 100.0% 96.4%
3694050 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.58 43.0 4.57e-01 100.0% 89.5%
4582107 305.1.1.2 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2 0.57 33.0 3.52e-01 86.0% 63.2%
3185186 304.9.1.90 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › PF29326 0.57 45.0 4.44e-01 100.0% 78.3%
3486089 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 46.0 4.82e-01 100.0% 100.0%
4961623 304.8.1.115 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › T2SSM_b 0.56 41.0 4.45e-01 100.0% 92.2%
3918290 304.9.1.5 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › Transposase_22 0.56 46.0 4.85e-01 100.0% 100.0%
3753992 304.47.1.1 a+b two layers › Alpha-beta plaits › SEA domain › SEA domain › SEA 0.56 50.0 4.57e-01 100.0% 99.3%
3688199 327.19.1.0 a+b two layers › Alpha-lytic protease prodomain-like › DNA mismatch repair protein MutL regulatory subdomain › DNA mismatch repair protein MutL regulatory subdomain 0.56 37.0 4.04e-01 91.6% 83.5%
4228321 304.113.1.0 a+b two layers › Alpha-beta plaits › Alpha subunit of glutamate synthase, insertion domain › Alpha subunit of glutamate synthase, insertion domain 0.56 39.0 4.08e-01 91.6% 81.1%
4955901 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 40.0 4.16e-01 99.1% 82.0%
3971017 304.133.1.1 a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.55 44.0 4.37e-01 100.0% 84.5%
3250924 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 44.0 4.60e-01 96.3% 94.0%
3996759 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 49.0 4.56e-01 100.0% 87.4%
2502610 304.28.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran 0.55 39.0 4.02e-01 92.5% 80.6%
4945381 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.54 40.0 4.42e-01 99.1% 97.6%
3484070 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.54 46.0 4.73e-01 99.1% 100.0%
4933378 304.133.1.1 a+b two layers › Alpha-beta plaits › 26 kDa periplasmic immunogenic protein › 26 kDa periplasmic immunogenic protein › SIMPL 0.54 44.0 4.50e-01 100.0% 92.4%
3798411 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.53 34.0 3.70e-01 92.5% 80.0%
5005283 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.53 36.0 4.08e-01 97.2% 100.0%
4400919 304.114.1.0 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain 0.53 35.0 4.04e-01 99.1% 98.7%
3837425 3922.1.1.336 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › POL3_N 0.53 46.0 4.72e-01 99.1% 100.0%
3910533 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.52 48.0 3.61e-01 99.1% 53.1%
4959099 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.52 37.0 4.21e-01 100.0% 100.0%
3941701 304.28.1.1 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain › ACR_tran 0.52 42.0 4.31e-01 100.0% 92.4%
4025112 304.114.1.2 a+b two layers › Alpha-beta plaits › Family B DNA polymerase insertion domain › Family B DNA polymerase insertion domain › POL3_N 0.52 43.0 4.44e-01 100.0% 99.0%
4003643 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.52 40.0 3.93e-01 100.0% 76.5%
4660210 329.1.1.0 a+b two layers › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain › Prokaryotic AspRS, insert domain 0.50 34.0 3.24e-01 92.5% 58.4%