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OK283618.1__UCR92206.1__LPLM1_00080__00071

Bact-Vir

OK283618.1__UCR92206.1__LPLM1_00080__00071

Identity

Accession:
OK283618 ↗
Kingdom:
phage

Quality

71.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 12-64
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1qr4A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.76 54.0 4.62e-01 100.0% 47.1%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.73 54.0 5.55e-01 100.0% 88.0%
1a21A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.73 54.0 4.50e-01 100.0% 44.9%
3bcwA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.69 44.0 3.53e-01 100.0% 33.7%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.68 55.0 4.47e-01 100.0% 45.9%
2yn5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 48.0 4.27e-01 100.0% 51.9%
3mfiA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.67 55.0 4.41e-01 100.0% 51.3%
4ewfA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.66 51.0 3.23e-01 83.0% 17.9%
4u7cB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.66 56.0 4.55e-01 100.0% 53.2%
2iciA01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.65 54.0 4.06e-01 100.0% 75.2%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.64 51.0 3.72e-01 100.0% 30.5%
3weeA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.63 48.0 3.38e-01 86.8% 55.2%
2o3iA01 3.40.1610.10 Alpha Beta › 3-Layer(aba) Sandwich › CV3147-like fold › CV3147-like domain 0.63 52.0 3.47e-01 98.1% 24.2%
1jx4A04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.63 51.0 4.36e-01 100.0% 61.2%
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.63 42.0 4.13e-01 98.1% 64.9%
2fhzA00 3.30.190.30 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › 0.62 51.0 4.24e-01 100.0% 59.4%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.62 54.0 4.50e-01 98.1% 88.0%
2gnxA02 3.30.450.240 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.62 42.0 3.46e-01 79.2% 35.8%
4uzgA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.62 54.0 3.87e-01 100.0% 39.7%
6julA02 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.61 52.0 4.40e-01 100.0% 55.2%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.61 45.0 3.43e-01 100.0% 32.3%
1alo006 3.30.365.10 Alpha Beta › 2-Layer Sandwich › Aldehyde Oxidoreductase; domain 4 › Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain 0.61 46.0 3.57e-01 83.0% 76.2%
2konA00 3.30.160.350 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 46.0 4.05e-01 84.9% 72.0%
4ncbA01 3.30.530.60 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › 0.60 48.0 3.66e-01 96.2% 94.5%
8be0A01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.60 45.0 3.07e-01 81.1% 32.5%
2pstX00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.60 45.0 4.36e-01 83.0% 88.5%
7yh1A01 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.59 42.0 3.34e-01 79.2% 36.0%
1pqsA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 40.0 3.64e-01 100.0% 49.4%
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.57 44.0 3.57e-01 100.0% 42.5%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.57 49.0 3.84e-01 100.0% 44.2%
2gy5A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 3.82e-01 100.0% 50.5%
3b8fB00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.56 47.0 3.52e-01 100.0% 35.9%
1xvsA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.56 47.0 3.67e-01 100.0% 42.3%
1u1sA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 44.0 4.15e-01 100.0% 71.2%
2pw4A00 1.10.3300.10 Mainly Alpha › Orthogonal Bundle › Jann2411-like fold › Jann2411-like domain 0.55 43.0 3.03e-01 86.8% 76.0%
3wdhA01 2.60.40.2320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 45.0 3.76e-01 100.0% 51.0%
2dk6A01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.55 45.0 3.90e-01 100.0% 79.8%
3szpB02 3.40.190.290 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › 0.54 37.0 2.55e-01 88.7% 18.6%
3wqbA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.54 44.0 3.28e-01 100.0% 72.3%
7c2fB01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.54 45.0 3.95e-01 100.0% 61.6%
5hdwA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.54 44.0 3.46e-01 100.0% 43.5%
3deeA02 3.90.930.50 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › 0.54 39.0 3.11e-01 77.4% 43.0%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 43.0 4.03e-01 98.1% 71.2%
2f1eA00 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.54 45.0 3.62e-01 100.0% 54.3%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.53 46.0 3.57e-01 100.0% 52.5%
5xbfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 42.0 3.65e-01 92.5% 97.7%
3nyiB01 3.40.50.10170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 43.0 3.18e-01 96.2% 77.1%
4r3dA03 2.60.120.1680 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.36e-01 100.0% 39.4%
2pwyA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.52 44.0 4.38e-01 98.1% 100.0%
1wmhA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 42.0 3.77e-01 100.0% 81.9%
1oruA00 2.40.33.20 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.51 40.0 2.97e-01 100.0% 51.4%
1i9gA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.51 44.0 4.17e-01 98.1% 89.1%
1o54A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.50 44.0 4.02e-01 100.0% 80.6%
2ej9A02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.50 38.0 3.95e-01 94.3% 91.8%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4978280 304.19.1.1 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.73 60.0 5.14e-01 90.6% 100.0%
3234045 304.112.1.0 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.71 55.0 4.28e-01 86.8% 55.8%
5053654 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.70 50.0 3.90e-01 77.4% 38.3%
3573883 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.70 60.0 4.63e-01 100.0% 46.4%
5015713 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.70 59.0 5.72e-01 100.0% 95.0%
3289401 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.69 57.0 4.31e-01 98.1% 37.7%
3958896 4187.2.1.0 a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 0.69 53.0 5.12e-01 98.1% 75.0%
3998052 304.112.1.0 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.69 51.0 4.12e-01 84.9% 54.8%
3578579 304.112.1.0 a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain 0.67 50.0 3.95e-01 83.0% 53.3%
3705532 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.67 56.0 4.34e-01 100.0% 45.4%
3600513 302.1.1.0 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.66 56.0 4.40e-01 100.0% 49.2%
5012895 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.66 54.0 5.41e-01 100.0% 92.7%
3969006 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.66 47.0 4.96e-01 100.0% 91.1%
3699048 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.66 54.0 4.39e-01 100.0% 51.3%
3593981 302.1.1.0 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.65 55.0 4.52e-01 100.0% 56.2%
3968122 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.65 47.0 4.94e-01 100.0% 91.1%
4946583 302.1.1.0 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.65 55.0 4.39e-01 100.0% 48.7%
4004704 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.65 46.0 4.91e-01 100.0% 91.1%
3216210 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.65 54.0 5.53e-01 100.0% 98.0%
3959474 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.65 53.0 4.08e-01 100.0% 43.6%
3917143 304.100.1.0 a+b two layers › Alpha-beta plaits › PurS-like › PurS-like 0.65 54.0 5.26e-01 98.1% 85.0%
4568546 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.65 55.0 4.34e-01 100.0% 44.5%
5049412 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.65 54.0 4.24e-01 100.0% 43.2%
4659266 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.65 53.0 4.37e-01 100.0% 53.6%
4345869 302.1.1.0 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain 0.64 53.0 4.38e-01 100.0% 54.5%
4463006 3115.2.1.0 a+b two layers › GP2-like › GP2 › GP2 0.64 46.0 4.88e-01 100.0% 93.3%
4942796 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.64 53.0 4.36e-01 100.0% 53.6%
4970098 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.64 54.0 4.36e-01 100.0% 49.1%
4418109 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.64 54.0 4.07e-01 100.0% 41.3%
4939155 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.64 54.0 4.28e-01 100.0% 49.6%
4333681 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.64 53.0 4.24e-01 100.0% 48.3%
4977520 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.63 52.0 4.30e-01 100.0% 53.6%
4647063 223.1.1.6 a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 0.63 46.0 3.03e-01 79.2% 46.4%
4463387 304.5.1.18 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › PrmA 0.62 51.0 4.28e-01 100.0% 88.6%
4089566 3857.1.1.1 beta sandwiches › Head-binding domain of phage P22 tailspike protein › Head-binding domain of phage P22 tailspike protein › Head-binding domain of phage P22 tailspike protein › Head_binding 0.62 45.0 3.76e-01 100.0% 44.2%
3988557 2003.1.5.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.62 47.0 3.00e-01 83.0% 24.4%
3963369 4222.1.1.2 a+b two layers › ImmE5-like › ImmE5-like › ImmE5-like › Imm40 0.61 50.0 4.33e-01 100.0% 58.9%
3933380 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.61 47.0 3.74e-01 84.9% 77.4%
4158528 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.61 50.0 4.06e-01 100.0% 52.2%
3250477 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 44.0 3.47e-01 79.2% 87.4%
4204424 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.61 51.0 4.21e-01 100.0% 51.4%
4434140 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.61 50.0 4.01e-01 100.0% 48.3%
4007508 3115.6.1.2 a+b two layers › GP2-like › Bacterial RNA polymerase subunit epsilon › Bacterial RNA polymerase subunit epsilon › PF28597 0.61 46.0 4.67e-01 100.0% 90.0%
3699329 70.3.1.1 beta barrels › beta-clip › SET domain-like › SET domain-like › SET 0.60 44.0 2.79e-01 100.0% 13.0%
4450183 302.1.1.1 a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.58 43.0 3.52e-01 84.9% 43.5%
4304758 2010.1.1.1 a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › DegV 0.57 44.0 3.20e-01 100.0% 29.0%
3607227 4012.3.1.0 a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 0.57 45.0 4.66e-01 96.2% 96.0%
3475431 133.1.1.0 alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) 0.56 49.0 3.20e-01 100.0% 40.8%
3430287 5.1.3.142 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.54 45.0 2.87e-01 100.0% 94.4%
4978421 1.1.2.16 beta barrels › cradle loop barrel › RIFT-related › double psi › MacB_PCD 0.50 44.0 3.39e-01 100.0% 59.2%