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OK310503.1__UGL63297.1__SEA_TOKKI_74__00074
Bact-VirOK310503.1__UGL63297.1__SEA_TOKKI_74__00074
Identity
- Accession:
- OK310503 ↗
- Kingdom:
- phage
Quality
87.6
mean pLDDT
Taxonomy
TaxID: 2894719
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-85
Domain cluster:
rep: OX359470.1__CAI3971138.1__ORM20_00089__00084__D1-73
D2
high
residues 118-169
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF25185.2 best | Tad3 | 53.6 | 2.50e-14 | 100.0% | 49.6% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1nxuA01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.73 | 54.0 | 4.75e-01 | 92.3% | 53.2% |
| 4h8aB01 | 1.10.1530.10 | Mainly Alpha › Orthogonal Bundle › Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 › Malate/L-lactate/L-sulpholactate dehydrogenase, four-helix barrel | 0.64 | 47.0 | 4.52e-01 | 92.3% | 70.0% |
| 1c3cA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.64 | 50.0 | 4.38e-01 | 92.3% | 56.8% |
| 1dcnA03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.62 | 50.0 | 4.57e-01 | 92.3% | 66.7% |
| 2dkzA01 | 1.10.150.50 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Transcription Factor, Ets-1 | 0.61 | 46.0 | 4.39e-01 | 98.1% | 68.9% |
| 2g8lB01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.61 | 52.0 | 4.83e-01 | 98.1% | 82.1% |
| 1tj7A03 | 1.10.40.30 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) | 0.61 | 49.0 | 4.49e-01 | 92.3% | 67.6% |
| 2zcuA02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.60 | 48.0 | 3.75e-01 | 100.0% | 40.9% |
| 3f2bA07 | 6.10.140.1510 | Special › Helix non-globular › Helix Hairpins › | 0.58 | 49.0 | 4.24e-01 | 100.0% | 76.7% |
| 3kp1E02 | 1.10.8.1000 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ornithine 4,5 aminomutase S component, alpha subunit-like | 0.55 | 47.0 | 4.29e-01 | 96.2% | 98.6% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5039066 | 2488.1.1.1 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase | 0.86 | 59.0 | 3.70e-01 | 71.2% | 16.7% |
| 3588797 | 4084.1.1.0 ↗ | alpha bundles › ChaB-like › ChaB-like › ChaB-like | 0.75 | 50.0 | 4.73e-01 | 71.2% | 60.0% |
| 4932940 | 2006.1.4.2 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN | 0.73 | 54.0 | 4.17e-01 | 78.8% | 87.3% |
| 5037034 | 2488.1.1.1 ↗ | a/b three-layered sandwiches › alpha/beta knot › alpha/beta knot › alpha/beta knot › SpoU_methylase | 0.71 | 52.0 | 3.37e-01 | 78.8% | 19.6% |
| 4838968 | 4957.1.1.0 ↗ | a+b complex topology › helical domain in yeast RNA-polymerases › third helical domain in yeast RNA-polymerase II beta-prime subunit › third helical domain in yeast RNA-polymerase II beta-prime subunit | 0.66 | 49.0 | 4.46e-01 | 84.6% | 60.0% |
| 4594328 | 181.1.1.2 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins › FlhF_N | 0.65 | 59.0 | 5.17e-01 | 100.0% | 74.7% |
| 4146096 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.65 | 57.0 | 4.98e-01 | 100.0% | 65.0% |
| 4388170 | 103.1.1.6 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › RuvA_C | 0.62 | 52.0 | 5.04e-01 | 98.1% | 83.3% |
| 5015839 | 4009.1.1.1 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom | 0.61 | 52.0 | 4.75e-01 | 98.1% | 77.1% |
| 3590321 | 3584.1.1.1 ↗ | alpha arrays › DNA polymerase III finger domain › DNA polymerase III finger domain › DNA polymerase III finger domain › DNA_pol3_finger | 0.61 | 47.0 | 3.11e-01 | 84.6% | 45.0% |
| 5052463 | 3273.1.1.0 ↗ | alpha arrays › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins › Filamentous archaeal viruses coat proteins | 0.58 | 48.0 | 4.35e-01 | 100.0% | 67.5% |
| 4046570 | 181.1.1.0 ↗ | alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins | 0.58 | 50.0 | 4.84e-01 | 98.1% | 85.0% |
| 3728568 | 103.4.1.0 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein | 0.57 | 49.0 | 4.73e-01 | 100.0% | 98.3% |
| 4947232 | 4953.1.1.0 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like | 0.57 | 47.0 | 4.20e-01 | 98.1% | 65.0% |
| 3528955 | 103.4.1.6 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › EloA-BP1 | 0.57 | 48.0 | 4.69e-01 | 100.0% | 95.0% |
D3
high
residues 180-233
Domain cluster:
rep: NC_070877.1__YP_010660492.1__PP914_gp126__00126__D67-118
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF25185.2 best | Tad3 | 35.9 | 7.80e-09 | 92.6% | 32.8% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4gqaB02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.56 | 47.0 | 3.15e-01 | 100.0% | 73.9% |
| 3p8bB02 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 46.0 | 4.42e-01 | 92.6% | 87.1% |
| 4fb5A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.56 | 47.0 | 3.11e-01 | 98.1% | 73.1% |
| 2kt4B01 | 2.40.128.20 | Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain | 0.55 | 45.0 | 3.49e-01 | 100.0% | 95.1% |
| 7uvpA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 40.0 | 2.63e-01 | 79.6% | 21.9% |
| 2y8nB02 | 2.20.70.100 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.54 | 34.0 | 3.63e-01 | 92.6% | 77.3% |
| 3jtzA00 | 3.30.160.390 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain | 0.52 | 38.0 | 3.42e-01 | 77.8% | 61.0% |
| 1w7cA02 | 3.10.450.40 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 42.0 | 3.43e-01 | 98.1% | 70.9% |
| 3ulbA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 39.0 | 3.51e-01 | 87.0% | 74.7% |
| 4hn3A00 | 3.10.570.10 | Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain | 0.51 | 39.0 | 2.54e-01 | 92.6% | 35.5% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3747037 | 209.1.1.1 ↗ | a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › Lectin_C | 0.59 | 40.0 | 2.99e-01 | 70.4% | 93.3% |
| 3519023 | 3964.1.1.1 ↗ | beta meanders › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE domain of RBM10 › OCRE | 0.58 | 45.0 | 4.10e-01 | 90.7% | 61.3% |
| 4666593 | 241.1.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C | 0.57 | 48.0 | 3.52e-01 | 100.0% | 75.5% |
| 3578905 | 4184.1.1.0 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat | 0.57 | 45.0 | 3.90e-01 | 92.6% | 72.2% |
| 3933562 | 4357.1.1.3 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_2 | 0.56 | 46.0 | 3.37e-01 | 100.0% | 78.6% |
| 3926176 | 4357.1.1.3 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_2 | 0.56 | 46.0 | 3.91e-01 | 100.0% | 74.0% |
| 4255188 | 318.1.1.0 ↗ | a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 | 0.56 | 39.0 | 3.33e-01 | 72.2% | 60.0% |
| 4343546 | 6.1.1.4 ↗ | beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil › Ricin_B_lectin | 0.56 | 40.0 | 3.07e-01 | 77.8% | 56.2% |
| 4594253 | 4.1.1.54 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_2 | 0.56 | 40.0 | 3.76e-01 | 79.6% | 100.0% |
| 3760738 | 4357.1.1.9 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE, WWE_3 | 0.55 | 45.0 | 3.44e-01 | 100.0% | 79.9% |
| 3692657 | 4357.1.1.3 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_2 | 0.55 | 44.0 | 3.56e-01 | 98.1% | 59.3% |
| 3236407 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.55 | 44.0 | 3.87e-01 | 100.0% | 71.6% |
| 3743195 | 4357.1.1.3 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_2 | 0.55 | 45.0 | 3.22e-01 | 98.1% | 37.8% |
| 3378830 | 220.1.1.153 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TRF2_HOY1 | 0.54 | 40.0 | 3.12e-01 | 87.0% | 66.9% |
| 3620042 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.54 | 40.0 | 3.56e-01 | 83.3% | 57.8% |
| 4069524 | 239.3.1.0 ↗ | beta barrels › Ribosomal protein L25-like › FAS1 domain › FAS1 domain | 0.54 | 41.0 | 3.13e-01 | 90.7% | 69.0% |
| 3689073 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.53 | 43.0 | 3.64e-01 | 98.1% | 58.3% |
| 3786106 | 4357.1.1.3 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE_2 | 0.52 | 39.0 | 3.31e-01 | 87.0% | 77.1% |
| 865437 | 241.1.1.2 ↗ | a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C | 0.52 | 42.0 | 3.24e-01 | 100.0% | 86.8% |
| 3254632 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.52 | 40.0 | 3.82e-01 | 88.9% | 95.4% |
| 3877626 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.52 | 43.0 | 3.75e-01 | 100.0% | 88.9% |
| 4941285 | 331.1.1.0 ↗ | a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like | 0.51 | 40.0 | 3.71e-01 | 88.9% | 82.9% |