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OK381870.1__UHD87241.1__X__00034

Bact-Vir

OK381870.1__UHD87241.1__X__00034

Identity

Accession:
OK381870 ↗
Kingdom:
phage

Quality

93.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_D4

TaxID: 2877522

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-186
PDB
Domain cluster: rep: NC_042082.1__YP_009619897.1__FDJ07_gp002__00002__D1-186
D2 high residues 191-280
PDB
Domain cluster: representative
CATH (1)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1k32A03 3.30.750.44 Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › 0.52 31.0 3.38e-01 84.4% 72.2%
ECOD (2)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4032640 601.19.1.3 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Phage_Mu_F 0.88 50.0 3.30e-01 100.0% 16.8%
4961444 1075.3.1.1 ↗ alpha bundles › Type II ABC exporter transmembrane domain fold › Type I ABC importer transmembrane domain fold › Type I ABC importer transmembrane domain fold › BPD_transp_1 0.54 38.0 2.68e-01 74.4% 69.5%
D3 high residues 297-358
PDB
Domain cluster: representative
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y0uA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.83 62.0 5.36e-01 87.1% 53.9%
1tc3C00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.80 58.0 6.29e-01 77.4% 92.2%
2lvsA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.79 54.0 5.91e-01 71.0% 91.8%
1gdtB03 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.77 53.0 5.96e-01 79.0% 97.8%
3zh9B03 1.20.272.10 Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › 0.70 58.0 4.54e-01 90.3% 61.9%
2r0qC02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.70 55.0 5.84e-01 85.5% 100.0%
2e18A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.69 55.0 3.61e-01 87.1% 39.1%
2cfxA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 47.0 5.07e-01 85.5% 90.0%
6az6A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 49.0 4.61e-01 77.4% 66.7%
4gkfA00 1.10.520.30 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain 0.66 57.0 4.41e-01 100.0% 80.8%
4d7rA01 1.10.220.20 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › 0.66 49.0 4.49e-01 80.6% 62.2%
1l0oC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 50.0 5.16e-01 83.9% 93.0%
4mdvB03 1.10.220.10 Mainly Alpha › Orthogonal Bundle › Annexin V; domain 1 › Annexin 0.63 43.0 3.85e-01 79.0% 49.5%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 47.0 4.38e-01 85.5% 97.6%
7n1nB01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.61 38.0 3.86e-01 75.8% 61.9%
1r1uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 4.23e-01 90.3% 79.6%
3v53E00 1.20.1390.10 Mainly Alpha › Up-down Bundle › PWI domain › PWI domain 0.57 50.0 4.25e-01 98.4% 89.2%
4k7cA01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.55 41.0 2.55e-01 80.6% 44.2%
2uyyA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.55 38.0 3.15e-01 74.2% 43.9%
4ga4A02 3.40.1030.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyrimidine Nucleoside Phosphorylase; Chain A, domain 2 › Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain 0.54 40.0 2.75e-01 83.9% 26.1%
3oceA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.53 40.0 4.19e-01 96.8% 92.7%
3n3wA00 1.10.1520.10 Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain 0.53 41.0 3.23e-01 88.7% 62.5%
1evsA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.52 43.0 3.27e-01 98.4% 76.7%
3eo8A00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.50 40.0 2.86e-01 93.5% 38.4%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4927434 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.89 61.0 7.00e-01 74.2% 97.8%
3283589 101.1.1.368 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_58 0.87 61.0 6.71e-01 72.6% 96.0%
4990647 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.87 64.0 6.79e-01 79.0% 87.3%
4966962 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.85 59.0 6.34e-01 72.6% 90.6%
3706139 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.85 61.0 6.78e-01 87.1% 94.0%
3879118 101.1.1.60 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_23 0.85 58.0 6.09e-01 74.2% 80.0%
3505559 101.1.6.19 ↗ alpha arrays › HTH › HTH › TrpR › PAX 0.83 59.0 5.51e-01 74.2% 62.7%
4008322 101.1.1.17 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.82 60.0 6.37e-01 79.0% 87.3%
3789627 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.82 58.0 5.76e-01 74.2% 72.3%
3925603 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.82 59.0 6.52e-01 85.5% 94.0%
3243649 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.82 58.0 5.07e-01 82.3% 51.1%
4010017 101.1.1.68 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 0.81 57.0 5.49e-01 74.2% 80.0%
4952035 101.1.1.17 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.81 59.0 6.08e-01 79.0% 80.0%
3278040 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.80 57.0 5.83e-01 74.2% 78.3%
3279330 101.1.1.68 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_38 0.80 55.0 5.19e-01 72.6% 72.0%
4121566 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.79 57.0 5.00e-01 75.8% 77.8%
4162857 101.1.1.17 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.78 55.0 6.01e-01 79.0% 92.0%
5006645 101.1.1.63 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_28 0.78 53.0 5.43e-01 71.0% 75.0%
3997733 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.78 61.0 6.00e-01 88.7% 78.5%
3933546 101.1.3.0 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like 0.78 56.0 5.27e-01 80.6% 62.7%
4974140 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.78 55.0 4.62e-01 74.2% 52.0%
3281228 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.77 54.0 5.34e-01 72.6% 72.3%
3163616 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.75 62.0 5.26e-01 87.1% 86.2%
3410877 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.74 54.0 5.19e-01 77.4% 68.6%
4965811 101.1.1.559 ↗ alpha arrays › HTH › HTH › Three-helical HTH › DUF7858 0.74 53.0 5.43e-01 85.5% 80.0%
1159643 101.1.1.17 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.72 55.0 5.27e-01 82.3% 77.5%
4003285 2004.5.1.2 ↗ a/b three-layered sandwiches › P-loop domains-like › Differentially expressed in normal cells and neoplasia (DENN) domain › Differentially expressed in normal cells and neoplasia (DENN) domain › Folliculin_C 0.72 62.0 4.12e-01 96.8% 69.6%
4386055 2005.1.1.47 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase, tRNA_Me_trans 0.71 58.0 3.74e-01 87.1% 38.8%
3959876 101.1.1.42 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4_2 0.71 58.0 4.85e-01 87.1% 89.0%
3587644 101.1.1.17 ↗ alpha arrays › HTH › HTH › Three-helical HTH › HTH_7 0.70 55.0 5.62e-01 83.9% 90.0%
235968 138.1.1.9 ↗ alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA_pol3_delta_C 0.70 58.0 4.56e-01 90.3% 62.4%
3587870 5060.2.1.1 ↗ alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.69 48.0 3.95e-01 72.6% 80.0%
5060990 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.67 53.0 3.45e-01 87.1% 36.3%
5071227 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.66 54.0 3.49e-01 91.9% 54.3%
4262428 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.66 56.0 3.59e-01 96.8% 55.8%
4957756 2005.1.1.18 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase 0.65 56.0 3.53e-01 96.8% 51.1%
4102570 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 43.0 4.66e-01 71.0% 88.0%
4994369 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.64 58.0 5.10e-01 100.0% 82.2%
4664976 2005.1.1.0 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.62 50.0 3.37e-01 88.7% 40.8%
3646784 109.4.1.1407 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › STAG, SCD, HEAT_SCC3-SA 0.59 41.0 2.41e-01 72.6% 11.8%
3987666 101.1.3.4 ↗ alpha arrays › HTH › HTH › tetra-helical, LuxR-like › HTH_30 0.55 45.0 4.18e-01 98.4% 100.0%
3718408 3922.1.1.0 ↗ alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.52 35.0 2.98e-01 72.6% 76.4%