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OK381870.1__UHD87307.1__X__00100

Bact-Vir

OK381870.1__UHD87307.1__X__00100

Identity

Accession:
OK381870 ↗
Kingdom:
phage

Quality

76.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Vibrio_phage_D4

TaxID: 2877522

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 56-144
PDB
Domain cluster: rep: OP380601.1__UYD59177.1__HPMBJEAJ_00062__00062__D8-122
CATH (40)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4h75A00 2.80.10.70 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › Spindlin/Ssty 0.74 51.0 3.85e-01 74.2% 31.7%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.70 32.0 3.72e-01 92.1% 57.6%
1cv8A00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.68 48.0 3.84e-01 74.2% 43.9%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 41.0 4.97e-01 76.4% 96.4%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.64 46.0 3.89e-01 74.2% 71.6%
2p4tA00 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.64 39.0 4.58e-01 74.2% 93.1%
5ygbA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 42.0 4.41e-01 76.4% 75.0%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 41.0 4.70e-01 75.3% 93.5%
6vilA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.63 47.0 3.99e-01 78.7% 68.3%
3askA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 41.0 4.75e-01 76.4% 95.2%
4ft4B01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.63 45.0 3.79e-01 75.3% 56.0%
3u12A00 2.30.29.180 Mainly Beta › Roll › PH-domain like › Ubiquitin carboxyl-terminal hydrolase 26/29/37, pleckstrin homology-like domain 0.62 44.0 4.23e-01 74.2% 77.9%
4bb7B00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.60 44.0 3.22e-01 76.4% 41.9%
7xpkA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.60 44.0 3.70e-01 76.4% 71.0%
3meuB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 40.0 4.37e-01 76.4% 83.8%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 39.0 4.47e-01 77.5% 95.2%
4jrnA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 44.0 3.80e-01 78.7% 71.6%
7cceA01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.59 43.0 3.66e-01 77.5% 65.6%
1w4sA00 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.59 43.0 3.67e-01 77.5% 66.4%
2kieA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.58 41.0 3.73e-01 74.2% 70.2%
3j7aF03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 40.0 4.39e-01 79.8% 90.1%
1y5oA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 42.0 3.86e-01 75.3% 80.0%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 45.0 4.03e-01 83.1% 75.2%
6az1E03 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.56 39.0 4.29e-01 79.8% 90.3%
3pieC05 2.170.260.40 Mainly Beta › Beta Complex › paz domain › 0.55 42.0 3.40e-01 79.8% 71.9%
6epkA02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.55 36.0 3.92e-01 77.5% 83.1%
3na2A00 3.40.1570.20 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › 0.55 39.0 3.49e-01 76.4% 63.8%
2ecuA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 39.0 3.26e-01 73.0% 83.2%
4l82A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 38.0 3.19e-01 73.0% 85.3%
3p54A02 3.30.67.10 Alpha Beta › 2-Layer Sandwich › Viral Envelope Glycoprotein; domain 2 › Viral Envelope Glycoprotein, domain 2 0.54 35.0 3.82e-01 79.8% 81.7%
1i0rA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 38.0 3.17e-01 74.2% 60.9%
1r4kA01 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.54 40.0 3.55e-01 79.8% 71.2%
3lnnA02 2.40.30.170 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain 0.54 35.0 3.47e-01 73.0% 63.4%
1njhA00 2.70.180.10 Mainly Beta › Distorted Sandwich › Protein Yojf; Chain: A; › Hypothetical protein YojF 0.54 40.0 3.84e-01 82.0% 88.9%
3cb0D00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 37.0 3.11e-01 73.0% 60.2%
5choF00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 37.0 3.07e-01 74.2% 61.3%
4q8gA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.51 36.0 2.48e-01 74.2% 80.5%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 40.0 3.37e-01 85.4% 90.4%
4zciA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 35.0 3.44e-01 83.1% 64.4%
2gfgA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.50 43.0 3.40e-01 95.5% 91.6%
ECOD (89)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3212772 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.74 56.0 6.13e-01 88.8% 97.3%
3236073 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.73 54.0 5.86e-01 85.4% 92.0%
3769507 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.73 44.0 4.86e-01 73.0% 75.7%
4027502 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 47.0 5.37e-01 78.7% 89.2%
3238955 4.1.1.377 ↗ beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.73 56.0 5.85e-01 87.6% 88.7%
3256432 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.71 44.0 5.27e-01 76.4% 93.3%
3758536 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 44.0 4.94e-01 74.2% 82.9%
3774692 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.69 47.0 4.92e-01 74.2% 77.5%
4982354 4.7.1.0 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 0.69 46.0 5.30e-01 75.3% 93.8%
3478898 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 41.0 4.68e-01 74.2% 81.5%
3568329 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 42.0 5.03e-01 75.3% 93.3%
3741680 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 41.0 5.03e-01 75.3% 98.2%
7380 219.1.1.34 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C47 0.68 48.0 3.84e-01 74.2% 43.9%
4093836 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 41.0 4.90e-01 75.3% 91.7%
3564972 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 42.0 4.67e-01 76.4% 81.4%
3660358 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 41.0 4.83e-01 75.3% 91.7%
4049824 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 43.0 3.92e-01 77.5% 50.4%
3392130 4.1.1.223 ↗ beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.66 42.0 4.78e-01 74.2% 87.7%
168961 206.1.1.30 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Kinase-like 0.66 47.0 3.08e-01 73.0% 28.1%
3629536 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 43.0 4.22e-01 77.5% 62.1%
3507146 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 42.0 4.34e-01 77.5% 68.2%
4501723 4.8.1.45 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Peptidase_U57 0.65 39.0 4.65e-01 73.0% 94.5%
3656952 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 47.0 4.31e-01 75.3% 70.4%
3750640 220.1.1.38 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › UCH_N 0.65 46.0 4.30e-01 74.2% 72.7%
4964768 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 40.0 4.73e-01 75.3% 93.3%
3768347 4.1.1.230 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7030 0.64 44.0 5.01e-01 74.2% 95.4%
3582876 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.64 48.0 4.58e-01 84.3% 67.6%
3488114 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 41.0 3.74e-01 76.4% 49.2%
4373835 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 46.0 3.48e-01 77.5% 56.3%
3454181 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.63 46.0 3.62e-01 76.4% 57.8%
3491615 213.1.1.0 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.63 42.0 3.01e-01 75.3% 24.0%
3315471 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.63 46.0 4.73e-01 87.6% 81.2%
3495447 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.63 41.0 3.77e-01 75.3% 50.0%
3725498 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 44.0 4.89e-01 75.3% 94.3%
3793962 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.63 48.0 4.83e-01 87.6% 82.2%
2557227 4.7.1.2 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.62 43.0 4.56e-01 78.7% 81.8%
3497731 220.1.1.56 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › ASK_PH 0.62 45.0 3.93e-01 75.3% 59.3%
3217771 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 47.0 4.44e-01 83.1% 65.5%
3823515 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.62 45.0 3.74e-01 76.4% 64.5%
3460287 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.62 45.0 3.69e-01 76.4% 60.6%
3585538 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.62 48.0 4.66e-01 87.6% 75.0%
3824811 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.62 45.0 3.71e-01 76.4% 63.9%
3927213 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.61 41.0 4.59e-01 76.4% 88.6%
3484606 4.1.1.51 ↗ beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.61 40.0 4.13e-01 75.3% 70.6%
3474784 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.60 44.0 3.54e-01 77.5% 66.9%
4243780 206.1.1.30 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Kinase-like 0.60 45.0 2.95e-01 78.7% 27.7%
3521904 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 43.0 4.20e-01 74.2% 77.9%
3935716 4.8.1.6 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.60 40.0 4.27e-01 74.2% 81.3%
3629455 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.59 45.0 3.48e-01 79.8% 61.1%
3330137 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.59 44.0 3.63e-01 78.7% 61.9%
4605602 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 42.0 4.71e-01 79.8% 100.0%
3313137 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.59 43.0 3.58e-01 77.5% 60.6%
3242335 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.59 43.0 3.37e-01 77.5% 49.7%
3798312 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.59 38.0 4.24e-01 75.3% 84.3%
3501834 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 41.0 4.20e-01 71.9% 84.7%
3621303 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 42.0 3.68e-01 74.2% 57.7%
3575867 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.59 43.0 3.76e-01 78.7% 71.7%
3461775 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 42.0 4.57e-01 76.4% 100.0%
3992087 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.58 43.0 3.46e-01 77.5% 58.2%
3607981 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 40.0 4.32e-01 77.5% 85.1%
3490245 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 41.0 4.16e-01 74.2% 81.1%
5024617 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.58 41.0 4.07e-01 74.2% 72.6%
3510024 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.58 41.0 3.87e-01 75.3% 80.9%
None — 0.57 42.0 3.40e-01 77.5% 70.0%
3176265 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.57 41.0 3.38e-01 74.2% 42.6%
4029199 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 41.0 2.34e-01 74.2% 8.1%
4530545 4.1.1.217 ↗ beta barrels › SH3 › SH3 › SH3 › zf-CCCH_4 0.57 41.0 4.05e-01 75.3% 87.4%
3923766 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 42.0 3.85e-01 77.5% 74.8%
3549321 4.11.1.5 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24, PF31032 0.57 40.0 3.32e-01 75.3% 41.2%
5026284 4.15.1.2 ↗ beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.56 40.0 3.95e-01 74.2% 71.6%
3171334 1.1.7.102 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF28793 0.55 36.0 3.40e-01 75.3% 54.5%
3583597 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 38.0 3.80e-01 77.5% 71.1%
4929262 4.11.1.2 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S26 0.54 42.0 3.49e-01 84.3% 47.1%
3683487 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.54 40.0 3.22e-01 77.5% 54.3%
4608778 1.1.7.107 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25965 0.54 36.0 3.29e-01 77.5% 50.8%
5056905 1.1.7.28 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.54 37.0 3.71e-01 74.2% 70.0%
3589823 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.54 37.0 4.20e-01 89.9% 100.0%
4032674 1.1.7.88 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.54 38.0 3.34e-01 74.2% 58.5%
3941958 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 37.0 3.77e-01 74.2% 80.0%
3605269 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 36.0 3.53e-01 74.2% 64.0%
3550047 4.1.1.20 ↗ beta barrels › SH3 › SH3 › SH3 › BAH 0.52 45.0 3.72e-01 97.8% 89.4%
3870945 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 45.0 3.53e-01 97.8% 88.5%
4072524 1.1.7.88 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.52 41.0 3.87e-01 86.5% 72.7%
4022367 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 36.0 3.48e-01 71.9% 76.0%
3971620 1.1.7.88 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.52 40.0 3.33e-01 82.0% 62.0%
5037173 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 36.0 3.53e-01 75.3% 67.4%
3720023 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.51 35.0 3.39e-01 73.0% 63.0%
4391878 1.1.7.88 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.51 42.0 3.51e-01 89.9% 67.1%
5017073 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.50 40.0 3.50e-01 92.1% 76.7%