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OK490361.1__UFE15727.1__X__00001

Bact-Vir

OK490361.1__UFE15727.1__X__00001

Identity

Accession:
OK490361 ↗
Kingdom:
phage

Quality

85.2 mean pLDDT

Taxonomy

Salmonella_phage_ZC-S1_prp

TaxID: 2894717

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-59
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09003.17 best Arm-DNA-bind_1 30.3 4.90e-07 100.0% 56.8%
CATH (60)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z1bA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.90 77.0 7.11e-01 97.8% 75.4%
6eudA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.82 45.0 2.95e-01 95.7% 14.7%
4lvnP00 3.30.70.2380 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.77 54.0 4.54e-01 76.1% 86.4%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.76 50.0 3.92e-01 100.0% 34.4%
6zwwC01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.76 47.0 3.09e-01 100.0% 16.2%
3oqgA00 3.40.1440.50 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › 0.76 47.0 3.06e-01 97.8% 16.5%
2pe4A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.75 53.0 3.02e-01 73.9% 20.4%
4hn3A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.74 50.0 2.98e-01 71.7% 12.7%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 48.0 3.33e-01 91.3% 22.7%
4g9yA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 47.0 3.34e-01 93.5% 22.8%
2ewlA00 3.30.160.330 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.71 53.0 5.02e-01 82.6% 76.8%
1txdA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.71 61.0 4.54e-01 100.0% 38.8%
2xauA03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.70 48.0 3.17e-01 71.7% 20.2%
2fgeA01 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.70 59.0 3.75e-01 97.8% 71.7%
3bpvA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 46.0 3.27e-01 97.8% 23.4%
1pc6A00 1.10.3790.10 Mainly Alpha › Orthogonal Bundle › NinB fold › NinB 0.68 56.0 4.03e-01 93.5% 84.4%
2eyqA07 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.67 59.0 4.15e-01 100.0% 46.9%
3k4uE01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.67 53.0 3.91e-01 93.5% 31.9%
8d3mA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.67 55.0 3.49e-01 91.3% 33.8%
2dy1A03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.66 47.0 4.09e-01 78.3% 82.9%
2nmlA00 3.30.2260.10 Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary 0.66 49.0 3.95e-01 84.8% 40.0%
1vx7H01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.66 49.0 4.19e-01 87.0% 92.9%
5unhA02 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.65 46.0 2.79e-01 73.9% 28.7%
3rh9A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.65 45.0 2.74e-01 100.0% 11.8%
4s1hA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.65 53.0 3.19e-01 89.1% 86.8%
1p4xA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 46.0 3.28e-01 78.3% 58.3%
7oode01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.62 47.0 4.14e-01 82.6% 58.8%
3n7cA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 52.0 3.99e-01 95.7% 43.5%
3kk7A03 3.30.160.840 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 46.0 4.25e-01 84.8% 69.4%
7jgsG02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 44.0 3.43e-01 95.7% 35.7%
3fdfA02 6.10.140.550 Special › Helix non-globular › Helix Hairpins › 0.60 43.0 4.13e-01 78.3% 64.3%
3lxqA01 3.30.1120.80 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.60 41.0 3.34e-01 71.7% 90.9%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.60 49.0 3.46e-01 97.8% 39.5%
1neiA00 3.30.160.220 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › YoaG 0.59 43.0 4.01e-01 78.3% 71.7%
3nroA00 3.40.630.190 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › LCP protein 0.59 48.0 3.10e-01 91.3% 82.1%
2l48A00 3.30.70.2030 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 45.0 3.74e-01 84.8% 74.1%
2xmjA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 40.0 3.74e-01 76.1% 95.2%
1i24A01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 50.0 3.19e-01 100.0% 43.6%
6nrzA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.58 48.0 2.88e-01 93.5% 25.1%
3llcA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 47.0 2.99e-01 95.7% 24.1%
4c1sA00 1.50.10.20 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.57 51.0 2.98e-01 100.0% 96.5%
6aqgD02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.56 46.0 2.80e-01 93.5% 19.0%
7l9pK01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.56 44.0 3.28e-01 87.0% 86.6%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.56 39.0 3.65e-01 71.7% 73.7%
1k8kA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.55 35.0 2.94e-01 100.0% 31.5%
4djhA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.55 45.0 2.76e-01 91.3% 33.1%
5ucoA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.55 47.0 3.31e-01 100.0% 35.9%
4nnaA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.55 46.0 2.78e-01 95.7% 19.0%
4l8nA03 3.30.160.670 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.55 43.0 3.10e-01 97.8% 57.3%
2kqrA01 3.30.1910.20 Alpha Beta › 2-Layer Sandwich › so0334 like fold › asparaginyl-tRNA synthetase, N-terminal domain 0.55 42.0 3.62e-01 84.8% 98.6%
4arvA02 3.40.50.1240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like 0.54 46.0 3.40e-01 97.8% 57.9%
2a3vA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.54 48.0 3.07e-01 100.0% 23.2%
3ajdA01 3.30.70.1170 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 0.53 37.0 3.48e-01 76.1% 93.3%
1nj1A02 3.40.50.800 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain 0.53 36.0 3.07e-01 80.4% 39.4%
3v4rA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.53 40.0 2.66e-01 91.3% 55.3%
5r0dB01 2.60.34.20 Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › 0.52 40.0 2.98e-01 91.3% 43.4%
3p2aA01 2.30.30.380 Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 0.52 35.0 3.73e-01 71.7% 100.0%
3pieA02 3.30.1370.250 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.51 40.0 3.31e-01 95.7% 80.0%
2qrdE01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.50 38.0 2.57e-01 82.6% 63.9%
3weeB03 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.50 34.0 2.71e-01 100.0% 30.4%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4004358 252.2.1.3 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_1 0.91 79.0 7.70e-01 93.5% 92.0%
3685955 304.3.1.0 ↗ a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.77 57.0 4.71e-01 82.6% 83.5%
4027686 252.2.1.0 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like 0.73 61.0 5.87e-01 100.0% 90.9%
3499127 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.72 59.0 4.41e-01 100.0% 36.5%
5079134 7512.1.1.0 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase 0.72 49.0 2.89e-01 71.7% 39.7%
4027687 330.3.1.0 ↗ a+b two layers › dsRBD-like › Peptidyl-tRNA hydrolase domain-like › Peptidyl-tRNA hydrolase domain-like 0.72 57.0 5.56e-01 100.0% 90.9%
3598177 318.1.1.0 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.71 55.0 4.56e-01 87.0% 94.1%
2106272 318.1.1.0 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.70 52.0 4.33e-01 84.8% 92.2%
5071748 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.70 49.0 4.25e-01 76.1% 100.0%
3516087 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.70 58.0 5.05e-01 97.8% 61.3%
4987009 3837.1.1.1 ↗ alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF6847 0.69 48.0 3.32e-01 73.9% 30.7%
3271679 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 60.0 4.23e-01 100.0% 31.7%
5083528 101.1.11.0 ↗ alpha arrays › HTH › HTH › Ribbon-helix-helix 0.68 49.0 3.96e-01 95.7% 41.2%
5011097 327.11.2.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.68 48.0 4.18e-01 78.3% 85.3%
4956219 7502.1.1.1 ↗ a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon 0.67 54.0 4.18e-01 100.0% 42.5%
3711985 3883.1.1.1 ↗ alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf 0.66 56.0 3.52e-01 95.7% 36.8%
6543 4099.1.1.3 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 0.66 50.0 4.79e-01 91.3% 74.6%
3331569 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.66 47.0 4.52e-01 78.3% 65.5%
3797637 4291.1.1.0 ↗ beta barrels › Oxysterol-binding protein › Oxysterol-binding protein › Oxysterol-binding protein 0.65 56.0 3.34e-01 100.0% 77.0%
4510477 2002.1.1.33 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_20 0.65 58.0 3.27e-01 100.0% 25.1%
3617650 5001.1.1.0 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like 0.64 46.0 2.89e-01 76.1% 41.2%
3593736 192.7.1.0 ↗ alpha bundles › Long alpha-hairpin › tRNA-binding arm › tRNA-binding arm 0.64 45.0 3.44e-01 73.9% 61.0%
5014365 2004.1.1.76 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF87 0.63 56.0 3.28e-01 100.0% 41.9%
5082053 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.63 52.0 3.32e-01 100.0% 41.9%
4989457 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.63 43.0 4.26e-01 82.6% 68.0%
4046039 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.62 55.0 4.51e-01 100.0% 94.1%
3646226 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.62 46.0 3.94e-01 82.6% 63.7%
3937186 221.4.1.21 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › PF30669 0.62 46.0 2.83e-01 80.4% 56.9%
3600598 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 51.0 3.70e-01 95.7% 42.9%
3277232 543.1.1.6 ↗ few secondary structure elements › Frizzled cysteine-rich domain-related › Frizzled cysteine-rich domain-related › Frizzled cysteine-rich domain-related › PF29739 0.62 46.0 3.13e-01 100.0% 23.1%
4944397 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.61 43.0 4.26e-01 82.6% 70.0%
3498875 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.61 46.0 3.84e-01 91.3% 68.4%
3933447 2484.1.1.9 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve 0.61 47.0 3.72e-01 91.3% 67.6%
4113442 101.26.1.2 ↗ alpha arrays › HTH › Tex N-terminal domain › Tex N-terminal domain › HTH_44 0.60 42.0 3.03e-01 76.1% 28.3%
3649913 5050.1.1.58 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › NFD4_C 0.59 52.0 3.53e-01 100.0% 77.1%
3506749 633.21.1.23 ↗ alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 › CD20 0.58 51.0 3.47e-01 100.0% 75.8%
4383296 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.58 48.0 4.05e-01 95.7% 95.0%
3937349 207.1.1.0 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.58 51.0 3.05e-01 100.0% 20.3%
3739884 1016.1.1.1 ↗ alpha arrays › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Dimerization domain in caprin-1 and PAN3 › Pan3_PK 0.57 50.0 3.62e-01 97.8% 77.5%
3261577 543.1.1.6 ↗ few secondary structure elements › Frizzled cysteine-rich domain-related › Frizzled cysteine-rich domain-related › Frizzled cysteine-rich domain-related › PF29739 0.57 43.0 3.11e-01 84.8% 30.7%
3927286 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.56 48.0 4.12e-01 100.0% 60.0%
3461225 3525.1.1.0 ↗ alpha arrays › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain › Bromodomain-containing protein 4 ET domain 0.56 47.0 4.12e-01 93.5% 98.6%
3283208 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.56 41.0 3.00e-01 93.5% 64.0%
3733736 109.4.1.356 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Fungal_trans 0.56 47.0 2.68e-01 93.5% 19.8%
4979047 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 45.0 3.13e-01 93.5% 58.8%
4967607 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.55 48.0 3.36e-01 100.0% 54.2%
3714275 868.1.1.0 ↗ a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related 0.55 49.0 3.08e-01 100.0% 91.6%
3622943 101.1.2.28 ↗ alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B 0.55 46.0 3.99e-01 97.8% 98.7%
4012038 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.55 47.0 2.94e-01 100.0% 55.4%
4935088 3291.1.1.0 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related 0.55 47.0 3.44e-01 100.0% 72.3%
4959043 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.54 43.0 3.16e-01 100.0% 32.3%
5050610 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.54 42.0 3.71e-01 84.8% 91.4%
4142311 109.4.1.1297 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS, PF27570 0.53 47.0 2.63e-01 100.0% 11.8%
4994522 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.53 45.0 3.16e-01 100.0% 54.4%
3604748 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 46.0 2.99e-01 100.0% 55.3%
4465307 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 36.0 3.54e-01 73.9% 72.0%
3232477 101.1.15.0 ↗ alpha arrays › HTH › HTH › HAT1, C-terminal domain 0.52 46.0 3.61e-01 100.0% 76.0%
3568886 2492.1.1.29 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › APOBEC4_like 0.51 41.0 2.75e-01 91.3% 39.5%
5000687 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 37.0 3.48e-01 80.4% 74.1%
4965555 327.11.2.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.50 40.0 3.37e-01 97.8% 74.4%
5076583 304.120.1.0 ↗ a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.50 41.0 3.51e-01 91.3% 81.3%
D2 medium residues 76-157
PDB
Domain cluster: representative
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF22022.3 best Phage_int_M 34.8 2.20e-08 98.8% 71.9%
PF02899.24 Phage_int_SAM_1 25.8 1.50e-05 95.1% 96.4%
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1z19A01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.96 92.0 8.47e-01 100.0% 82.0%
2kobA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.86 78.0 7.47e-01 100.0% 86.0%
2kj5A00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.86 79.0 6.92e-01 100.0% 69.8%
2khvA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.85 79.0 7.80e-01 100.0% 96.5%
2a3vB01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.81 72.0 6.91e-01 97.6% 88.3%
2kj8A00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.81 72.0 6.41e-01 100.0% 69.5%
2kiwA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.79 70.0 6.90e-01 97.6% 95.3%
3sqiA01 1.10.150.540 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.75 64.0 5.97e-01 96.3% 76.8%
1s4eG02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.75 49.0 3.95e-01 81.7% 35.9%
1j5wA02 1.20.58.180 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 0.71 39.0 4.08e-01 100.0% 58.4%
3d1uA03 1.20.1270.240 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.67 46.0 4.28e-01 95.1% 57.4%
3r2cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.66 59.0 4.96e-01 100.0% 61.6%
2g8lB01 1.10.8.380 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 0.64 43.0 4.71e-01 91.5% 85.1%
1sqgA01 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.60 53.0 4.46e-01 100.0% 58.9%
1xl7A01 1.10.275.20 Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › Choline/Carnitine o-acyltransferase 0.60 53.0 4.87e-01 95.1% 83.5%
4akgA14 1.20.1280.160 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.59 42.0 3.83e-01 74.4% 100.0%
1tj7A03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.58 44.0 4.68e-01 100.0% 94.4%
2xgcA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 41.0 3.54e-01 73.2% 57.8%
1tjoB00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.58 51.0 4.03e-01 100.0% 72.6%
1fpoC02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.57 40.0 3.88e-01 72.0% 86.8%
3d2eA06 1.20.1270.10 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.57 43.0 3.89e-01 95.1% 58.4%
2chpA00 1.20.1260.10 Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle 0.56 50.0 4.12e-01 98.8% 85.1%
5tw1D01 1.10.274.100 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › RNA polymerase Rpb1, domain 3 0.56 50.0 4.15e-01 100.0% 93.8%
1v9vA01 1.20.1480.20 Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › MAST3 pre-PK domain-like 0.56 45.0 4.34e-01 90.2% 94.7%
4x5mA00 1.20.1280.290 Mainly Alpha › Up-down Bundle › Monooxygenase › 0.55 40.0 3.97e-01 95.1% 73.3%
1jkwA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.54 42.0 3.99e-01 98.8% 71.3%
4nleA03 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.52 40.0 4.20e-01 100.0% 93.4%
4pl3B03 1.20.1440.180 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › KEN domain 0.50 39.0 3.43e-01 100.0% 55.0%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2010353 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.95 91.0 7.88e-01 100.0% 70.7%
3946053 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.93 88.0 7.33e-01 100.0% 62.3%
4004359 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.93 88.0 7.56e-01 100.0% 71.7%
3291009 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.92 87.0 7.90e-01 100.0% 78.1%
3965042 186.1.1.8 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.91 86.0 7.55e-01 100.0% 71.3%
3948596 186.1.1.8 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.91 84.0 7.38e-01 100.0% 70.4%
4192110 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.90 85.0 7.69e-01 100.0% 79.0%
3946029 186.1.1.8 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.89 83.0 7.28e-01 100.0% 71.3%
4566550 186.1.1.1 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_1 0.88 82.0 7.61e-01 100.0% 84.0%
3589876 186.1.1.3 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_5 0.86 80.0 7.48e-01 100.0% 82.0%
4947439 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.86 78.0 7.56e-01 97.6% 90.0%
135076 186.1.1.8 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_M 0.86 79.0 7.11e-01 100.0% 75.0%
4959184 186.1.1.4 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.85 78.0 7.39e-01 98.8% 85.3%
4954763 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.83 70.0 6.80e-01 97.6% 82.2%
5028331 186.1.1.4 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.83 74.0 7.08e-01 97.6% 86.3%
5022016 186.1.1.4 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.83 75.0 7.14e-01 98.8% 85.3%
299159 186.1.1.4 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.81 72.0 6.68e-01 97.6% 80.6%
4981576 186.1.1.4 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.81 70.0 6.80e-01 93.9% 86.7%
5030306 186.1.1.4 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.81 71.0 6.75e-01 96.3% 85.3%
4198887 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.81 73.0 6.70e-01 98.8% 81.9%
4994276 186.1.1.4 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.80 70.0 6.79e-01 98.8% 86.7%
5081699 186.1.1.4 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_4 0.79 69.0 6.69e-01 96.3% 91.1%
135559 186.1.1.5 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N › Phage_int_SAM_3 0.79 70.0 6.46e-01 97.6% 79.6%
3385552 186.1.1.0 ↗ alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.71 62.0 6.02e-01 98.8% 100.0%
4386662 3291.1.1.158 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Seryl_tRNA_N 0.67 38.0 3.35e-01 97.6% 40.0%
4957411 102.1.2.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase 0.58 50.0 4.20e-01 98.8% 76.6%
4058310 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.57 42.0 3.04e-01 81.7% 39.3%
5065586 102.1.2.0 ↗ alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › DNA-glycosylase 0.51 43.0 3.26e-01 97.6% 82.3%
3475428 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.50 39.0 2.87e-01 84.1% 48.4%