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OK499971.1__UGO47200.1__COBRASIX_33__00033
Bact-VirOK499971.1__UGO47200.1__COBRASIX_33__00033
Identity
- Accession:
- OK499971 ↗
- Kingdom:
- phage
Quality
92.4
mean pLDDT
Taxonomy
TaxID: 2894794
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-69
Domain cluster:
rep: LC545445.1__BCD83184.1__NrS4_02__00002__D4-72
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF06806.20 best | DUF1233 | 96.6 | 7.80e-28 | 100.0% | 82.9% |
CATH (32)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2kvvA00 | 1.10.1660.60 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › Putative excisionased domain DUF1233 | 0.86 | 78.0 | 7.02e-01 | 100.0% | 74.4% |
| 2zhgA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.81 | 63.0 | 4.91e-01 | 100.0% | 40.5% |
| 3gp4B00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.80 | 64.0 | 4.88e-01 | 100.0% | 38.5% |
| 3gpvA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.79 | 65.0 | 5.16e-01 | 100.0% | 46.0% |
| 5d8cA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.79 | 65.0 | 4.96e-01 | 100.0% | 41.3% |
| 1r8eA02 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.79 | 62.0 | 5.78e-01 | 100.0% | 68.5% |
| 1y6uA01 | 3.90.105.50 | Alpha Beta › Alpha-Beta Complex › Molybdopterin biosynthesis moea protein, domain 2 › | 0.79 | 60.0 | 6.47e-01 | 100.0% | 98.0% |
| 3ucsA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.77 | 60.0 | 5.02e-01 | 100.0% | 49.5% |
| 5yc9B01 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.77 | 56.0 | 4.67e-01 | 98.3% | 46.4% |
| 3hh0A01 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.76 | 62.0 | 5.80e-01 | 100.0% | 72.2% |
| 1s6lA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.68 | 44.0 | 4.63e-01 | 86.2% | 75.0% |
| 6j0eB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 45.0 | 3.66e-01 | 87.9% | 37.6% |
| 2l4eA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.64 | 39.0 | 3.98e-01 | 98.3% | 61.4% |
| 1mkmB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.64 | 43.0 | 3.96e-01 | 86.2% | 53.9% |
| 2hoeA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 44.0 | 4.46e-01 | 91.4% | 79.3% |
| 2zkzC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 47.0 | 4.18e-01 | 96.6% | 59.8% |
| 4i98C01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 45.0 | 4.15e-01 | 86.2% | 64.0% |
| 2d1hB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 43.0 | 3.69e-01 | 91.4% | 48.0% |
| 3df8A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 48.0 | 4.00e-01 | 98.3% | 50.5% |
| 3w6kC00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 43.0 | 3.81e-01 | 86.2% | 54.0% |
| 2fbhA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 48.0 | 3.73e-01 | 96.6% | 42.3% |
| 1jgsA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 48.0 | 3.66e-01 | 96.6% | 39.9% |
| 2a2lC00 | 3.30.450.150 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain | 0.57 | 36.0 | 2.78e-01 | 81.0% | 25.9% |
| 4esbA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.55 | 46.0 | 3.91e-01 | 98.3% | 64.1% |
| 2isyA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 45.0 | 3.45e-01 | 96.6% | 66.7% |
| 5eoxB03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.53 | 38.0 | 3.06e-01 | 77.6% | 55.5% |
| 1ctfA00 | 3.30.1390.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Ribosomal protein L7/L12, C-terminal domain/Adaptor protein ClpS | 0.53 | 35.0 | 3.32e-01 | 96.6% | 57.4% |
| 7u37A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 41.0 | 4.03e-01 | 86.2% | 79.4% |
| 6rnzA00 | 1.10.260.40 | Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains | 0.51 | 39.0 | 3.78e-01 | 98.3% | 72.7% |
| 4nkpA01 | 3.30.450.150 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain | 0.51 | 42.0 | 3.37e-01 | 98.3% | 82.3% |
| 3fpwA01 | 3.30.450.150 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Haem-degrading domain | 0.51 | 40.0 | 3.33e-01 | 96.6% | 83.2% |
| 1t6sB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 36.0 | 3.38e-01 | 86.2% | 59.7% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 138911 | 101.1.9.10 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › DUF1233 | 0.86 | 78.0 | 7.31e-01 | 100.0% | 82.9% |
| 4419013 | 101.1.9.13 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Tn916-Xis | 0.85 | 66.0 | 6.61e-01 | 100.0% | 81.7% |
| 4191032 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.84 | 63.0 | 6.68e-01 | 100.0% | 92.0% |
| None | — | 0.76 | 62.0 | 5.81e-01 | 100.0% | 74.3% | |
| 3948248 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.75 | 64.0 | 6.17e-01 | 100.0% | 83.1% |
| 2168161 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.73 | 54.0 | 5.52e-01 | 100.0% | 84.2% |
| 3587635 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.73 | 57.0 | 5.73e-01 | 100.0% | 86.7% |
| 4117084 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.70 | 60.0 | 5.02e-01 | 100.0% | 56.0% |
| 4443612 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.69 | 53.0 | 5.62e-01 | 96.6% | 98.0% |
| 3164271 | 101.1.9.136 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › PF29765 | 0.66 | 54.0 | 5.25e-01 | 100.0% | 84.6% |
| 3741040 | 206.1.1.133 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › UBA_2 | 0.66 | 40.0 | 4.31e-01 | 87.9% | 72.0% |
| 4008376 | 101.1.9.16 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › HTH_17 | 0.65 | 56.0 | 5.59e-01 | 98.3% | 91.7% |
| 3933408 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 46.0 | 4.15e-01 | 86.2% | 55.0% |
| 4975591 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.63 | 44.0 | 4.14e-01 | 86.2% | 61.4% |
| 4078914 | 101.1.9.30 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Pescadillo_N | 0.61 | 52.0 | 4.74e-01 | 96.6% | 73.8% |
| 5065189 | 101.1.2.222 ↗ | alpha arrays › HTH › HTH › winged helix domain › PH0730-like_N | 0.57 | 45.0 | 3.83e-01 | 96.6% | 52.0% |
| 3598369 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 43.0 | 3.58e-01 | 87.9% | 47.8% |
| 3905886 | 376.1.1.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4 | 0.56 | 34.0 | 3.06e-01 | 91.4% | 40.0% |
| 4476647 | 101.1.2.15 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR | 0.55 | 46.0 | 3.56e-01 | 96.6% | 41.4% |
| 4562408 | 101.1.2.76 ↗ | alpha arrays › HTH › HTH › winged helix domain › CtsR | 0.55 | 41.0 | 3.82e-01 | 84.5% | 61.3% |
| 4010080 | 223.6.1.1 ↗ | a+b three layers › Profilin-like › GlcG-like › GlcG-like › HbpS-like | 0.55 | 42.0 | 3.40e-01 | 91.4% | 78.4% |
| 3289064 | 101.1.2.26 ↗ | alpha arrays › HTH › HTH › winged helix domain › HxlR | 0.54 | 44.0 | 3.39e-01 | 96.6% | 40.0% |
| 3551057 | 376.1.1.29 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-C3HC4_4 | 0.54 | 34.0 | 3.06e-01 | 91.4% | 45.0% |
| 3972702 | 223.6.1.1 ↗ | a+b three layers › Profilin-like › GlcG-like › GlcG-like › HbpS-like | 0.53 | 40.0 | 3.20e-01 | 91.4% | 78.3% |
| 4975278 | 282.1.1.0 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain | 0.52 | 41.0 | 3.17e-01 | 91.4% | 77.9% |
| 3519121 | 101.1.2.92 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_11 | 0.52 | 41.0 | 3.38e-01 | 89.7% | 78.2% |
| 4934934 | 1056.1.1.1 ↗ | a+b two layers › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › tRNA pseudouridine synthase TruD insertion domain › TruD | 0.51 | 40.0 | 2.85e-01 | 93.1% | 85.0% |
| 4153047 | 167.1.1.1 ↗ | alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 | 0.51 | 44.0 | 3.28e-01 | 98.3% | 57.3% |
| 4024667 | 221.1.2.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Alpha-L RNA-binding motif | 0.51 | 40.0 | 4.05e-01 | 98.3% | 90.0% |
| 1124917 | 223.6.1.1 ↗ | a+b three layers › Profilin-like › GlcG-like › GlcG-like › HbpS-like | 0.51 | 42.0 | 3.26e-01 | 98.3% | 73.8% |
| 5048147 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.50 | 41.0 | 3.47e-01 | 94.8% | 59.0% |
| 4171935 | 167.1.1.1 ↗ | alpha arrays › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal protein S7 › Ribosomal_S7 | 0.50 | 43.0 | 3.18e-01 | 98.3% | 53.8% |