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OK570186.1__UJH95983.1__X__00085

Bact-Vir

OK570186.1__UJH95983.1__X__00085

Identity

Accession:
OK570186 ↗
Kingdom:
phage

Quality

44.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lietduovirus› Pantoea_phage_Nafs113

TaxID: 2894291

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 302-370
PDB
D2 medium residues 371-443
PDB
Domain cluster: rep: MF034659.1__ARV77571.1__X__00007__D301-386
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2pnlA00 3.30.230.110 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.60 46.0 3.31e-01 82.2% 36.0%
5oj2B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 40.0 3.78e-01 82.2% 75.0%
2hi4A00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.54 44.0 2.81e-01 98.6% 70.0%
1atiB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 45.0 3.08e-01 100.0% 64.9%
2gs8A01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.52 39.0 3.07e-01 83.6% 54.0%
4dqlB01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 38.0 3.47e-01 82.2% 73.4%
4jgpA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 34.0 3.18e-01 97.3% 50.5%
3pieC01 3.40.50.12390 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 44.0 3.06e-01 100.0% 59.8%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.51 38.0 3.59e-01 83.6% 77.9%
1mkfA02 2.60.40.1340 Mainly Beta › Sandwich › Immunoglobulin-like › Chemokine-binding protein M3-like 0.50 38.0 3.03e-01 84.9% 98.3%
1flmA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.50 42.0 3.69e-01 100.0% 83.6%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3706300 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.59 52.0 3.77e-01 100.0% 42.6%
3262565 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 39.0 3.69e-01 83.6% 57.6%
None — 0.56 43.0 2.93e-01 83.6% 27.1%
3492991 1.1.5.1 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.55 40.0 3.26e-01 87.7% 41.8%
4028156 255.1.1.1 ↗ a+b complex topology › LCCL domain › LCCL domain › LCCL domain › LCCL 0.55 48.0 4.21e-01 98.6% 98.2%
5038181 314.1.1.2 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b 0.53 45.0 2.98e-01 100.0% 74.6%
4927645 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 42.0 3.65e-01 100.0% 55.7%
3919719 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 46.0 3.19e-01 97.3% 40.0%
3605629 2492.1.1.2 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › JAB 0.53 47.0 3.46e-01 100.0% 38.5%
3883916 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 39.0 3.42e-01 83.6% 62.6%
3726361 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 37.0 3.48e-01 87.7% 63.3%
4459946 223.1.1.6 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › dCache_1 0.51 41.0 3.00e-01 98.6% 51.4%
D3 medium residues 444-539
PDB