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OK570186.1__UJH96005.1__X__00107

Bact-Vir

OK570186.1__UJH96005.1__X__00107

Identity

Accession:
OK570186 ↗
Kingdom:
phage

Quality

87.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lietduovirus› Pantoea_phage_Nafs113

TaxID: 2894291

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-83
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
7bkea01 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 28.0 3.02e-01 91.6% 55.4%
4rzkA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 41.0 4.07e-01 80.7% 82.8%
1vq8E01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.53 33.0 3.43e-01 91.6% 65.8%
4feiA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 40.0 3.78e-01 83.1% 80.4%
6ewnA00 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 38.0 3.62e-01 79.5% 85.9%
ECOD (34)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3187641 5.1.5.72 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › CRT10 0.60 44.0 2.73e-01 78.3% 65.3%
4022963 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.60 44.0 2.80e-01 78.3% 70.6%
5052436 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.58 42.0 4.28e-01 74.7% 87.5%
3434758 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.55 45.0 3.04e-01 91.6% 98.8%
4930399 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.55 40.0 3.23e-01 77.1% 41.2%
4960987 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.54 41.0 3.39e-01 80.7% 47.3%
5037918 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.54 37.0 3.47e-01 85.5% 57.3%
4980371 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.54 40.0 4.00e-01 80.7% 81.8%
4962615 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.54 40.0 3.88e-01 80.7% 73.7%
4982583 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 40.0 3.30e-01 81.9% 44.4%
5011151 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 40.0 3.31e-01 81.9% 46.3%
5004113 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.53 37.0 3.90e-01 73.5% 88.0%
4974098 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.53 40.0 3.96e-01 81.9% 81.1%
5074343 319.1.1.23 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29697 0.53 38.0 3.94e-01 74.7% 90.7%
4947901 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.53 40.0 3.89e-01 81.9% 77.4%
4939095 319.1.1.4 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › ArsA_HSP20 0.53 37.0 3.92e-01 74.7% 88.0%
5031493 319.1.1.23 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF29697 0.53 39.0 3.98e-01 78.3% 88.5%
5005241 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.53 39.0 3.89e-01 80.7% 79.5%
5022840 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.53 37.0 3.74e-01 84.3% 72.9%
5040124 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 39.0 3.79e-01 80.7% 73.7%
4945854 318.1.1.0 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.52 36.0 3.44e-01 85.5% 60.0%
4932472 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.52 39.0 3.79e-01 80.7% 76.8%
5005273 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.52 39.0 3.88e-01 80.7% 81.8%
5069267 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.52 32.0 3.32e-01 75.9% 65.0%
4929896 318.1.1.1 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.52 32.0 3.33e-01 85.5% 65.0%
4947251 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.52 39.0 3.54e-01 81.9% 62.6%
4403166 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.51 35.0 3.91e-01 72.3% 96.9%
4974151 319.1.1.3 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CS 0.51 38.0 3.80e-01 80.7% 80.0%
5002276 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.51 37.0 3.86e-01 77.1% 86.7%
4928475 319.1.1.5 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS 0.51 37.0 3.38e-01 77.1% 59.6%
4946267 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.51 39.0 3.80e-01 81.9% 77.8%
4961746 304.8.1.122 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DmsR_N 0.51 39.0 3.63e-01 86.7% 100.0%
5056216 319.1.1.1 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HSP20 0.51 38.0 3.41e-01 80.7% 58.3%
3795449 319.1.1.0 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.50 38.0 3.46e-01 81.9% 62.6%
D2 medium residues 84-152
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ds5A00 6.20.220.10 Special › Other non-globular › Erythroid Transcription Factor GATA-1; Chain A › ClpX chaperone, C4-type zinc finger domain 0.81 49.0 5.99e-01 78.3% 97.7%
2dj7A00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.75 48.0 4.57e-01 84.1% 56.2%
2d8xA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.70 47.0 4.74e-01 88.4% 68.6%
2zetC00 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.66 51.0 4.03e-01 94.2% 40.4%
2dsmA00 3.30.40.30 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › YqaI domain 0.64 37.0 3.67e-01 72.5% 52.8%
2xjyA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.64 44.0 4.63e-01 72.5% 92.1%
2xqnT01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.61 45.0 4.74e-01 76.8% 91.9%
2miuA00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.60 44.0 3.88e-01 76.8% 59.2%
3fk5A02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.59 33.0 2.66e-01 82.6% 27.1%
4hi8B00 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.57 44.0 4.38e-01 84.1% 88.9%
1x62A01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.57 41.0 4.34e-01 76.8% 93.3%
1uw1A00 3.10.450.210 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 36.0 3.69e-01 76.8% 68.7%
2d8yA01 2.10.110.10 Mainly Beta › Ribbon › Cysteine Rich Protein › Cysteine Rich Protein 0.55 43.0 4.33e-01 87.0% 86.1%
3k4oA00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.54 36.0 2.43e-01 75.4% 18.5%
2wr7C01 3.90.20.10 Alpha Beta › Alpha-Beta Complex › Hemagglutinin Ectodomain; Chain B › 0.51 43.0 2.91e-01 91.3% 64.6%
6dnwA01 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.50 31.0 2.53e-01 87.0% 35.0%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3999058 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.80 47.0 5.42e-01 73.9% 82.0%
3849613 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.80 50.0 5.14e-01 78.3% 67.7%
4054302 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.77 45.0 5.35e-01 72.5% 88.9%
4990542 377.1.1.128 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › DUF2175 0.75 45.0 5.32e-01 78.3% 93.3%
3229070 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.74 46.0 4.93e-01 84.1% 73.3%
3529042 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.72 46.0 5.25e-01 79.7% 90.0%
3892614 376.1.1.100 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › PF26148 0.72 46.0 4.21e-01 84.1% 50.0%
3406681 377.1.1.5 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like › LIM 0.71 42.0 3.98e-01 71.0% 48.8%
5029865 5059.1.1.0 ↗ alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter 0.69 43.0 3.38e-01 76.8% 29.9%
2707795 376.1.1.38 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › TRAF3_RING 0.68 41.0 3.85e-01 76.8% 49.4%
None — 0.68 43.0 3.96e-01 78.3% 48.9%
4014164 376.1.2.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain 0.67 41.0 4.29e-01 75.4% 66.2%
3481280 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.67 46.0 4.87e-01 71.0% 93.3%
3492870 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.66 43.0 4.73e-01 73.9% 85.5%
3269312 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.64 43.0 4.14e-01 72.5% 60.0%
3435304 376.1.1.52 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › LIM 0.64 49.0 5.11e-01 82.6% 93.8%
3237227 376.1.1.103 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_Vps41 0.64 47.0 4.72e-01 81.2% 77.1%
3230544 386.1.1.247 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › LIM 0.63 44.0 3.64e-01 73.9% 46.7%
3257904 376.1.1.8 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.62 41.0 3.62e-01 73.9% 47.0%
185477 4255.1.1.1 ↗ few secondary structure elements › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 C-terminal domain-like › E6 0.62 47.0 4.77e-01 79.7% 82.1%
3322011 376.1.1.112 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf_RING_Vps8_fungal 0.61 44.0 4.57e-01 76.8% 81.5%
3798383 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.60 41.0 4.21e-01 71.0% 81.5%
3877406 386.1.1.308 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Zn_ribbon_IFT122_C 0.59 40.0 4.25e-01 72.5% 80.0%
3991522 376.1.1.103 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_Vps41 0.59 41.0 4.25e-01 75.4% 76.9%
3592489 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.59 41.0 4.23e-01 73.9% 80.0%
3526067 376.1.2.17 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › Cysteine-rich domain › LIM+PET 0.58 46.0 3.42e-01 87.0% 42.1%
3239537 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.57 38.0 3.63e-01 72.5% 58.7%
3473689 376.1.3.3 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › FYVE 0.51 39.0 4.03e-01 81.2% 98.5%
4984442 221.4.1.1 ↗ a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.50 36.0 2.78e-01 79.7% 76.1%
D3 medium residues 153-208
PDB
Domain cluster: representative
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.68 46.0 4.60e-01 75.0% 69.6%
3purA01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.57 38.0 3.56e-01 71.4% 100.0%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.56 39.0 3.99e-01 75.0% 89.3%
1vziA01 2.20.28.100 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Desulphoferrodoxin, N-terminal domain 0.54 33.0 3.75e-01 75.0% 89.5%
1k8kA04 3.90.640.10 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › ATPase, substrate binding domain, subdomain 4 0.52 40.0 3.52e-01 87.5% 84.8%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4582514 375.1.1.50 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_4 0.80 55.0 6.32e-01 71.4% 100.0%
4965882 375.1.1.344 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7836 0.77 53.0 5.45e-01 73.2% 90.7%
5058894 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.72 50.0 5.44e-01 73.2% 93.3%
1933336 375.1.1.50 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_4 0.69 49.0 5.37e-01 76.8% 100.0%
4998571 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 46.0 3.52e-01 71.4% 30.8%
5034626 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.67 44.0 4.86e-01 71.4% 95.0%
5053583 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.66 45.0 4.63e-01 71.4% 76.4%
3686965 376.1.6.1 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR 0.65 44.0 4.49e-01 71.4% 72.7%
3244152 376.1.1.27 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 0.62 43.0 3.80e-01 71.4% 53.8%
3227165 376.1.1.20 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_UBOX 0.61 42.0 3.48e-01 73.2% 41.3%
3494661 376.1.1.0 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.61 42.0 4.23e-01 71.4% 72.7%
3599921 375.3.1.0 ↗ few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger 0.60 42.0 4.03e-01 71.4% 84.4%
4025629 375.3.1.1 ↗ few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-DNL 0.59 42.0 3.70e-01 76.8% 80.0%
5074538 375.1.3.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 0.57 39.0 3.82e-01 73.2% 63.3%
4929289 375.1.1.329 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › TackOD1 0.57 40.0 3.79e-01 73.2% 69.2%
3761477 1.1.8.3 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GCV_T_C 0.52 36.0 3.01e-01 89.3% 36.5%