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OK624832.1__UFK09559.1__X__00034

Bact-Vir

OK624832.1__UFK09559.1__X__00034

Identity

Accession:
OK624832 ↗
Kingdom:
phage

Quality

76.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_DES1

TaxID: 2894399

Cluster

View cluster (6 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-236
PDB
Domain cluster: rep: Glutamine-fructose-6-phosphate_amidotransferase__NP_048448__Paramecium_bursaria_Chlorella_virus_1__10506__D3-231
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF13230.12 best GATase_4 33.5 3.10e-08 79.5% 50.2%
PF13522.12 GATase_6 31.8 1.80e-07 56.4% 93.1%
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1xffA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.83 76.0 7.60e-01 100.0% 93.3%
1ao0A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.82 76.0 6.83e-01 100.0% 73.7%
1ct9A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.82 65.0 7.17e-01 100.0% 97.9%
6czfA01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.81 78.0 6.85e-01 100.0% 75.4%
4zfjD00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.78 72.0 7.40e-01 100.0% 99.1%
1ea0A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.77 74.0 5.95e-01 100.0% 96.9%
7ylzA01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.75 67.0 7.01e-01 100.0% 100.0%
1jgtB01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.73 59.0 6.30e-01 100.0% 94.6%
1q15A01 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.67 55.0 5.91e-01 100.0% 97.1%
1dgsA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.60 26.0 3.92e-01 79.9% 95.8%
3fl7A05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 22.0 3.54e-01 79.9% 93.0%
4wtxA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 24.0 3.66e-01 80.3% 91.8%
2xomA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.53 24.0 2.99e-01 87.2% 66.2%
4bfeC01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 25.0 3.57e-01 95.3% 98.1%
ECOD (72)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5010284 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.87 75.0 7.88e-01 100.0% 96.3%
4990809 210.1.3.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.87 58.0 7.08e-01 99.1% 99.4%
5010282 210.1.3.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.85 66.0 7.34e-01 100.0% 98.4%
None — 0.83 78.0 7.88e-01 100.0% 96.6%
4149445 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.83 77.0 7.55e-01 100.0% 90.6%
5027017 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.83 71.0 7.47e-01 91.9% 97.1%
4484517 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.83 78.0 7.62e-01 100.0% 90.8%
4940798 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.83 77.0 7.62e-01 100.0% 91.8%
None — 0.83 76.0 7.63e-01 100.0% 94.0%
4995664 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.83 79.0 7.38e-01 98.7% 99.3%
4947599 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.83 80.0 7.85e-01 100.0% 95.1%
3532427 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.82 80.0 7.66e-01 100.0% 98.5%
4991572 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.82 80.0 7.94e-01 100.0% 99.2%
4928832 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.82 75.0 7.73e-01 100.0% 97.8%
4947903 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.82 77.0 7.57e-01 100.0% 91.8%
3741900 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.82 80.0 7.65e-01 100.0% 98.1%
4986617 210.1.3.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.82 72.0 7.48e-01 100.0% 96.4%
None — 0.82 76.0 7.60e-01 100.0% 93.3%
4680317 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.82 76.0 7.63e-01 100.0% 94.9%
4994995 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.82 78.0 7.84e-01 100.0% 97.9%
3356117 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.82 79.0 7.07e-01 100.0% 90.0%
None — 0.82 79.0 7.61e-01 100.0% 98.1%
5027645 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.82 79.0 7.59e-01 100.0% 96.2%
5052100 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.82 79.0 7.74e-01 100.0% 96.0%
4954583 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.82 79.0 7.83e-01 100.0% 96.7%
4976794 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.82 76.0 7.68e-01 100.0% 97.4%
3712071 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.82 79.0 7.19e-01 100.0% 88.1%
3993653 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.82 79.0 7.14e-01 100.0% 94.7%
3596220 210.1.3.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.82 79.0 7.19e-01 100.0% 94.6%
None — 0.82 79.0 7.19e-01 100.0% 92.2%
4976025 210.1.3.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.82 76.0 7.52e-01 100.0% 92.2%
4259223 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.82 76.0 7.65e-01 100.0% 95.7%
4321843 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.82 75.0 7.71e-01 94.9% 99.1%
None — 0.81 78.0 7.78e-01 100.0% 96.7%
3196133 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.81 78.0 6.91e-01 100.0% 94.7%
4999227 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.81 79.0 7.62e-01 100.0% 94.5%
3963821 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.81 77.0 7.49e-01 100.0% 91.2%
5071630 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.81 77.0 7.71e-01 100.0% 96.2%
3992414 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.81 65.0 7.00e-01 100.0% 95.5%
4955225 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.81 78.0 7.53e-01 99.6% 99.2%
4147605 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.81 78.0 7.58e-01 100.0% 92.8%
5032499 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.81 78.0 7.68e-01 100.0% 97.1%
3280543 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.80 78.0 7.68e-01 100.0% 97.1%
4588679 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.80 77.0 7.63e-01 100.0% 95.1%
5066749 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.80 77.0 7.63e-01 100.0% 96.7%
4000151 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.80 65.0 7.01e-01 100.0% 96.5%
5070626 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.80 77.0 7.47e-01 99.6% 99.2%
None — 0.80 77.0 7.63e-01 100.0% 96.7%
None — 0.80 76.0 7.55e-01 100.0% 95.8%
5011866 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.79 72.0 7.25e-01 94.0% 99.1%
4994017 210.1.3.1 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_2 0.79 76.0 6.79e-01 100.0% 99.0%
4541620 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.78 75.0 7.27e-01 100.0% 91.4%
4976792 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.78 56.0 6.46e-01 72.2% 97.1%
3965213 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.78 75.0 7.04e-01 100.0% 92.7%
3942872 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.78 74.0 7.20e-01 99.1% 99.2%
4991735 210.1.3.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.77 73.0 7.38e-01 100.0% 99.1%
5046400 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.77 74.0 7.03e-01 99.6% 99.2%
5055717 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.76 69.0 6.92e-01 100.0% 93.2%
3287103 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.75 67.0 6.85e-01 99.6% 93.9%
3951046 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.75 72.0 6.88e-01 99.6% 92.5%
5051945 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.75 66.0 6.90e-01 100.0% 98.1%
3284789 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.75 67.0 6.92e-01 100.0% 96.9%
3283168 210.1.3.3 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_4 0.74 72.0 6.77e-01 100.0% 98.5%
4140246 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.74 67.0 6.64e-01 100.0% 89.4%
4224238 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.74 69.0 6.98e-01 100.0% 97.4%
4974457 210.1.3.0 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases 0.74 66.0 6.88e-01 100.0% 98.6%
4646896 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.74 68.0 6.53e-01 100.0% 84.5%
3604150 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.73 70.0 6.74e-01 100.0% 90.8%
3263898 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.72 68.0 6.72e-01 100.0% 93.9%
4933986 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.72 47.0 5.51e-01 98.7% 92.1%
3838184 212.1.1.12 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › UPF0029 0.57 27.0 3.68e-01 98.3% 84.8%
4969338 212.1.1.12 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › UPF0029 0.55 27.0 3.65e-01 92.3% 87.2%
D2 high residues 294-378
PDB