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OK624832.1__UFK09598.1__X__00073

Bact-Vir

OK624832.1__UFK09598.1__X__00073

Identity

Accession:
OK624832 ↗
Kingdom:
phage

Quality

86.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_DES1

TaxID: 2894399

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-60_239-297
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2v5cA03 1.20.58.460 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Hyaluronidase post-catalytic domain-like 0.58 41.0 3.91e-01 71.6% 65.4%
6hftA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.57 35.0 3.40e-01 96.6% 55.9%
3tdvA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.57 45.0 3.71e-01 83.6% 85.9%
2va8A03 1.10.3380.30 Mainly Alpha › Orthogonal Bundle › Sec63 N-terminal domain-like fold › 0.55 41.0 3.32e-01 79.3% 99.5%
1i5nB00 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.54 37.0 3.69e-01 70.7% 91.1%
1bgfA00 1.10.532.10 Mainly Alpha › Orthogonal Bundle › Transcription Factor, Stat-4 › STAT transcription factor, N-terminal domain 0.54 33.0 3.26e-01 94.8% 56.5%
8amzT01 1.25.40.990 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 41.0 3.06e-01 100.0% 34.5%
4g1tA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 36.0 3.61e-01 100.0% 66.7%
4j5tA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.53 42.0 2.75e-01 83.6% 51.9%
2ozbE02 1.10.246.90 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Nop domain 0.52 36.0 3.78e-01 72.4% 79.4%
1ihgA02 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.52 36.0 3.34e-01 96.6% 57.2%
3hyuA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.52 41.0 3.90e-01 86.2% 90.1%
3a0oA02 1.50.10.100 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase 0.51 39.0 2.68e-01 100.0% 25.2%
1g8jA02 3.40.50.740 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 46.0 3.56e-01 99.1% 90.5%
6nifA01 3.30.900.10 Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain 0.50 37.0 3.11e-01 77.6% 100.0%
4kvmA01 1.25.40.1040 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.50 37.0 2.39e-01 75.9% 21.5%
ECOD (18)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5082459 4275.1.1.0 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like 0.82 65.0 6.98e-01 98.3% 97.0%
4928042 4275.1.1.0 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like 0.77 55.0 6.17e-01 73.3% 97.8%
3687615 109.24.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Helical domain in dedicator of cytokinesis protein 9 › Helical domain in dedicator of cytokinesis protein 9 0.60 40.0 4.36e-01 100.0% 82.1%
2527147 4266.1.1.3 ↗ alpha bundles › Hyaluronidase domain-like › Hyaluronidase post-catalytic domain-like › Hyaluronidase post-catalytic domain-like › NagJ_C 0.58 41.0 4.05e-01 72.4% 69.9%
4084484 6155.1.1.17 ↗ alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › LAB_N 0.56 36.0 4.43e-01 71.6% 100.0%
3254392 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 38.0 3.13e-01 100.0% 39.5%
3849038 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 40.0 3.08e-01 94.0% 33.9%
3209663 226.1.1.0 ↗ a+b two layers › POZ domain › POZ domain › POZ domain 0.56 36.0 4.22e-01 92.2% 90.6%
3854581 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 42.0 2.78e-01 82.8% 28.5%
4943511 180.1.1.1 ↗ alpha bundles › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › Acid phosphatase/Vanadium-dependent haloperoxidase › PAP2 0.54 46.0 3.81e-01 100.0% 52.2%
3517146 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.54 38.0 3.11e-01 100.0% 41.0%
4390762 628.1.1.1 ↗ alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD 0.53 37.0 3.70e-01 72.4% 88.3%
3195693 109.4.1.2823 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PPR, HAT_Syf1_CNRKL1_N 0.52 33.0 2.43e-01 99.1% 24.7%
3605533 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 39.0 3.00e-01 99.1% 35.4%
3175706 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.52 35.0 2.88e-01 100.0% 37.2%
3985675 3579.1.1.30 ↗ extended segments › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › NADH-quinone oxidoreductase subunit J › Imp-YgjV 0.52 46.0 4.36e-01 98.3% 92.9%
3620413 109.4.1.1134 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_INTS8_3 0.51 40.0 2.92e-01 82.8% 57.7%
3238246 150.1.1.0 ↗ alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin 0.50 40.0 4.13e-01 95.7% 90.0%
D2 high residues 68-154
PDB
Domain cluster: rep: IMGVR_UViG_3300026087_000110-3300026087-Ga0208113_10042681__D68-171
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1r5bA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.74 59.0 5.89e-01 89.7% 83.1%
8b6zA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.73 57.0 5.85e-01 82.8% 86.6%
3mcaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.73 60.0 5.36e-01 89.7% 64.4%
3e1yE01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.72 59.0 5.93e-01 92.0% 88.4%
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.71 60.0 6.07e-01 97.7% 92.0%
3wndA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.71 62.0 6.11e-01 96.6% 96.8%
1zunB02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.71 55.0 5.50e-01 90.8% 81.1%
2ey4D00 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.71 50.0 5.29e-01 86.2% 85.3%
3p26B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.70 59.0 5.65e-01 90.8% 82.2%
4ac9C04 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.69 47.0 4.90e-01 83.9% 77.5%
2yweA02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.68 60.0 5.76e-01 95.4% 84.0%
1b23P03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.67 59.0 5.78e-01 97.7% 92.6%
4paaA05 2.40.30.110 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Aminomethyltransferase beta-barrel domains 0.66 51.0 5.31e-01 97.7% 93.7%
7oo1A01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.64 48.0 5.13e-01 80.5% 90.9%
3qtgA02 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.63 52.0 5.10e-01 92.0% 81.9%
3gg8C03 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.63 51.0 4.99e-01 90.8% 79.4%
5ejlA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.62 44.0 3.98e-01 74.7% 91.9%
2h5eA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 48.0 3.95e-01 95.4% 44.5%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.62 41.0 4.32e-01 70.1% 75.3%
7r6yA01 2.40.33.10 Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like 0.62 47.0 4.64e-01 80.5% 79.3%
6ku8A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.61 37.0 4.13e-01 98.9% 76.8%
3qzqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.60 37.0 4.07e-01 98.9% 76.8%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.58 40.0 3.98e-01 72.4% 74.7%
2joqA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.58 46.0 4.94e-01 98.9% 100.0%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 46.0 3.92e-01 87.4% 65.3%
6hhuA01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 44.0 4.57e-01 98.9% 94.9%
1c5eA00 2.40.300.10 Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D 0.54 37.0 3.67e-01 72.4% 95.8%
2furB00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 43.0 3.40e-01 88.5% 48.4%
1txqA00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.53 37.0 3.96e-01 71.3% 100.0%
3s1tA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 42.0 4.38e-01 98.9% 98.8%
4j37A02 3.30.70.660 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Pseudouridine synthase I, catalytic domain, C-terminal subdomain 0.52 45.0 3.55e-01 97.7% 73.2%
3nfwA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 45.0 3.60e-01 98.9% 74.3%
4b6mB00 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.51 36.0 3.79e-01 72.4% 94.9%
4l82A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 45.0 3.75e-01 100.0% 80.1%
2d37A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 44.0 3.72e-01 100.0% 75.5%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3605852 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.74 62.0 5.99e-01 89.7% 81.1%
3219717 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.73 65.0 6.47e-01 97.7% 96.7%
5058285 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.73 58.0 5.76e-01 92.0% 82.2%
4525954 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.73 62.0 5.90e-01 92.0% 80.0%
3737206 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.73 59.0 5.56e-01 89.7% 72.4%
3502344 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.72 61.0 5.90e-01 92.0% 82.1%
4155840 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.72 63.0 5.84e-01 95.4% 97.2%
5046884 1.1.8.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.72 63.0 6.34e-01 97.7% 96.6%
3566270 1.1.8.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP-eEF1A_C 0.72 64.0 6.32e-01 97.7% 95.6%
3597995 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.72 64.0 5.90e-01 97.7% 77.3%
4930314 1.1.8.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.72 62.0 6.32e-01 95.4% 97.6%
3963772 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.72 57.0 5.65e-01 92.0% 82.2%
3206575 1.1.8.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.71 63.0 5.85e-01 97.7% 77.3%
3407712 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.71 63.0 6.10e-01 97.7% 87.8%
3585142 1.1.8.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.71 63.0 5.68e-01 97.7% 75.0%
3975132 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 47.0 4.71e-01 85.1% 65.6%
None — 0.71 50.0 3.30e-01 85.1% 18.5%
4514948 1.1.8.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_SelB 0.71 63.0 6.14e-01 97.7% 93.7%
5080510 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.71 62.0 6.09e-01 97.7% 95.8%
3221126 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 59.0 5.31e-01 90.8% 65.8%
1563513 1.1.8.10 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Ski7_3rd 0.71 62.0 5.81e-01 97.7% 89.7%
4981269 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 55.0 5.37e-01 82.8% 85.3%
5022644 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.70 52.0 5.12e-01 92.0% 72.6%
5055336 1.1.8.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.70 61.0 6.09e-01 97.7% 93.3%
5024153 1.1.8.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › aSelB_III 0.70 62.0 5.91e-01 97.7% 96.0%
4944212 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.69 61.0 6.12e-01 97.7% 100.0%
4328639 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.69 61.0 5.96e-01 97.7% 89.5%
4129006 1.1.8.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.69 61.0 5.92e-01 97.7% 95.8%
4317931 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.69 59.0 6.04e-01 97.7% 97.6%
4961202 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.68 58.0 5.75e-01 95.4% 94.4%
3266016 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.68 59.0 5.84e-01 94.3% 100.0%
3597932 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.68 59.0 5.75e-01 96.6% 97.9%
3187986 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.68 59.0 5.54e-01 96.6% 87.6%
5083379 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.68 58.0 5.84e-01 96.6% 98.9%
4027927 1.1.7.19 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.68 57.0 5.61e-01 92.0% 84.2%
4342941 1.1.8.5 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.68 58.0 5.92e-01 96.6% 97.6%
4989950 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 52.0 4.72e-01 81.6% 88.7%
5075927 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.67 57.0 5.73e-01 97.7% 95.5%
3689767 1.1.7.9 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.67 54.0 4.77e-01 87.4% 66.4%
4071075 1.1.8.1 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › GTP_EFTU_D3 0.66 57.0 5.37e-01 97.7% 85.7%
5056723 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 50.0 4.89e-01 82.8% 84.2%
3636050 1.1.8.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain 0.65 55.0 5.09e-01 96.6% 89.6%
4952364 1.1.7.28 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.65 49.0 5.03e-01 81.6% 85.9%
5007131 1.1.7.28 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › HAS-barrel 0.64 51.0 5.01e-01 85.1% 86.3%
4982501 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 50.0 4.90e-01 85.1% 87.4%
5079927 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.63 48.0 4.77e-01 81.6% 87.8%
4026033 1.1.15.1 ↗ beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK 0.63 52.0 4.85e-01 90.8% 76.4%
4319057 1.1.5.25 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.62 44.0 4.05e-01 74.7% 95.7%
3978012 11.1.4.25 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PapC_C 0.62 49.0 4.93e-01 96.6% 83.3%
5004050 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 40.0 4.36e-01 73.6% 81.4%
3585474 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 42.0 3.92e-01 70.1% 74.3%
4946081 1.1.7.145 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EFG_III 0.60 52.0 4.57e-01 97.7% 63.8%
3602774 304.51.1.8 ↗ a+b two layers › Alpha-beta plaits › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › CRISPR transcript (pre-crRNA) processing endoribonuclease-related › Cas6b_C 0.58 50.0 4.63e-01 98.9% 94.8%
3428351 304.102.1.6 ↗ a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.57 50.0 3.91e-01 98.9% 48.7%
3982999 4.1.1.60 ↗ beta barrels › SH3 › SH3 › SH3 › YccV-like 0.57 41.0 3.94e-01 74.7% 77.0%
3269002 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 47.0 4.50e-01 97.7% 84.8%
3713569 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 39.0 3.40e-01 73.6% 71.5%
4238046 3112.1.1.1 ↗ beta barrels › Uncharacterized protein Dsy0195 › Uncharacterized protein Dsy0195 › Uncharacterized protein Dsy0195 › YabP 0.55 37.0 4.21e-01 88.5% 95.3%
3600682 11.2.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain 0.55 46.0 4.28e-01 96.6% 99.1%
5033801 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 46.0 4.29e-01 97.7% 77.4%
4958244 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 46.0 4.11e-01 96.6% 88.0%
4954605 10.1.2.186 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) › DUF3344 0.53 48.0 4.25e-01 100.0% 95.2%
5056916 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 45.0 4.32e-01 97.7% 83.8%
3360171 4.1.1.18 ↗ beta barrels › SH3 › SH3 › SH3 › CAP_GLY 0.53 38.0 3.31e-01 75.9% 58.7%
3616159 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 43.0 3.55e-01 88.5% 100.0%
3489254 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.51 44.0 3.56e-01 100.0% 68.6%
5033328 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.50 42.0 3.91e-01 98.9% 78.3%
D3 high residues 158-238
PDB
Domain cluster: rep: NC_023863.2__YP_009021671.1__CHOED_05__00005__D58-166
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1o54A01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.55 44.0 4.57e-01 92.6% 98.6%
2f4nB02 2.40.30.90 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like 0.54 45.0 4.35e-01 96.3% 80.9%
4uzgA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 47.0 3.85e-01 100.0% 51.9%
1wxrA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 43.0 3.15e-01 92.6% 76.7%
5ccbA01 3.10.330.20 Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › 0.52 39.0 4.09e-01 87.7% 90.3%
3pjyA00 2.60.120.1140 Mainly Beta › Sandwich › Jelly Rolls › Protein of unknown function DUF192 0.52 40.0 3.46e-01 82.7% 95.3%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 34.0 3.77e-01 95.1% 90.0%
1a1rA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 34.0 3.40e-01 92.6% 64.7%
ECOD (4)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4072161 299.1.1.1 ↗ a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.56 32.0 2.62e-01 84.0% 28.1%
5054765 3127.1.1.1 ↗ beta sandwiches › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › DUF192 0.52 39.0 3.44e-01 80.2% 98.4%
4941672 3127.1.1.1 ↗ beta sandwiches › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › DUF192 0.51 37.0 3.29e-01 79.0% 98.4%
389280 3127.1.1.1 ↗ beta sandwiches › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › Putative transcription regulator R01717-related › DUF192 0.51 37.0 3.20e-01 80.2% 85.0%