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OK624832.1__UFK09621.1__X__00096

Bact-Vir

OK624832.1__UFK09621.1__X__00096

Identity

Accession:
OK624832 ↗
Kingdom:
phage

Quality

74.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Xanthomonas_phage_DES1

TaxID: 2894399

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-61
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3p9aF00 1.10.132.80 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.65 53.0 4.21e-01 100.0% 60.4%
3f02B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.62 46.0 3.76e-01 98.2% 43.0%
3fbuA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 41.0 3.01e-01 100.0% 25.9%
2b9dA01 3.30.160.330 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 33.0 3.70e-01 98.2% 92.3%
4i1sB00 4.10.80.340 Few Secondary Structures › Irregular › Rhinovirus 14, subunit 4 › 0.52 40.0 4.12e-01 89.1% 96.2%
5wrtB00 3.90.80.10 Alpha Beta › Alpha-Beta Complex › Inorganic Pyrophosphatase › Inorganic pyrophosphatase 0.51 40.0 2.77e-01 92.7% 73.3%
1t3yA00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.50 38.0 3.13e-01 100.0% 39.7%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3962463 4011.1.1.0 ↗ beta barrels › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins › beta-barrel domain in acetyl-CoA synthetase-like proteins 0.65 43.0 4.36e-01 100.0% 69.1%
1247620 101.1.1.72 ↗ alpha arrays › HTH › HTH › Three-helical HTH › GP3_package 0.65 54.0 4.18e-01 100.0% 61.9%
3580898 2007.2.3.1 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.61 47.0 3.52e-01 100.0% 31.2%
5026457 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.60 50.0 3.48e-01 100.0% 28.4%
3741285 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.57 46.0 3.89e-01 90.9% 91.6%
4516909 213.1.1.8 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › HlyC 0.57 48.0 3.51e-01 100.0% 32.7%
3604935 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.56 40.0 2.41e-01 83.6% 16.0%
3471267 304.48.1.3 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › DNA_pol_B 0.55 41.0 2.43e-01 83.6% 47.1%
4183868 878.1.1.1 ↗ a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 › DUF3194 0.55 38.0 3.46e-01 72.7% 84.8%
4022213 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 45.0 2.65e-01 100.0% 14.7%
3746949 391.1.2.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › VWC domain-related 0.54 31.0 2.88e-01 70.9% 42.9%
3905302 284.1.3.8 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › Fy-3 0.54 37.0 3.31e-01 74.5% 77.6%
4980263 327.7.1.0 ↗ a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like 0.53 41.0 3.70e-01 100.0% 60.0%
4517239 327.4.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N 0.53 35.0 3.08e-01 70.9% 65.3%
5040050 3326.1.1.1 ↗ alpha arrays › DNA-binding domain in UvrA › DNA-binding domain in UvrA › DNA-binding domain in UvrA › UvrA_DNA-bind 0.53 36.0 2.99e-01 74.5% 60.9%
3857887 5094.1.1.11 ↗ a+b duplicates or obligate multimers › OmpH-like › OmpH-like › OmpH-like › Fy-3 0.53 35.0 3.32e-01 70.9% 85.3%
4015771 210.1.4.0 ↗ a+b four layers › Ntn/PP2C › Ntn › (Glycosyl)asparaginase 0.53 45.0 2.81e-01 100.0% 39.1%
3560901 601.19.1.20 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Fy-3 0.53 35.0 3.34e-01 72.7% 86.7%
3519117 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.52 39.0 2.85e-01 87.3% 87.9%
4120507 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.52 41.0 3.53e-01 89.1% 73.7%
3774738 7529.1.1.11 ↗ a/b three-layered sandwiches › Macro domain-like › Macro domain-like › Macro domain-like › DUF2362 0.52 35.0 3.20e-01 72.7% 76.5%
4987228 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.52 40.0 2.87e-01 100.0% 27.2%
3925690 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.52 35.0 3.34e-01 74.5% 90.7%
4997864 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.52 41.0 3.35e-01 90.9% 88.1%
2391543 101.1.2.48 ↗ alpha arrays › HTH › HTH › winged helix domain › PadR 0.52 42.0 3.02e-01 100.0% 48.2%
4049992 327.4.1.1 ↗ a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N 0.52 38.0 3.31e-01 83.6% 80.0%
3474147 304.48.1.0 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.51 37.0 2.28e-01 81.8% 12.9%
3173378 109.4.1.338 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RIC1 0.50 41.0 2.79e-01 100.0% 31.4%
3174620 304.48.1.1 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.50 40.0 2.52e-01 89.1% 65.2%