←Back to structures

OK625546.1__UTQ72775.1__X__00033

Bact-Vir

OK625546.1__UTQ72775.1__X__00033

Identity

Accession:
OK625546 ↗
Kingdom:
phage

Quality

92.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mardecavirus› Vibrio_phage_vB_VpS_CC6

TaxID: 2961680

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-79
PDB
Domain cluster: rep: AB916497.1__BAS32847.1__X__00049__D278-385
CATH (15)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.72 49.0 4.69e-01 90.9% 61.1%
3vpbE00 2.20.28.160 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.62 38.0 4.35e-01 90.9% 83.9%
3stjA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.59 47.0 4.63e-01 89.6% 78.8%
1l1jA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 48.0 4.19e-01 90.9% 65.3%
4d02A01 3.60.15.10 Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.58 42.0 3.00e-01 76.6% 59.3%
1mc0A01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.58 40.0 3.25e-01 72.7% 80.4%
3dclA01 2.102.30.10 Mainly Beta › 3-layer Sandwich › tm1086 (SG structure) fold › tm1086 (SG structure) domain 0.58 45.0 3.62e-01 84.4% 54.2%
3h7tB01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 47.0 4.04e-01 89.6% 98.4%
2z9iC01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.58 47.0 4.47e-01 89.6% 75.0%
8ciwA02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.57 46.0 3.92e-01 92.2% 82.0%
4fvdA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.55 45.0 4.25e-01 89.6% 80.9%
2lp6A00 2.40.10.190 Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 0.55 44.0 4.25e-01 89.6% 76.9%
4g3vA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.55 38.0 3.05e-01 72.7% 79.0%
4ihqA01 3.30.450.370 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.54 36.0 2.96e-01 70.1% 69.8%
2gzaA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.50 40.0 3.63e-01 88.3% 92.6%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2642985 1.1.7.8 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L35Ae 0.67 53.0 5.18e-01 85.7% 82.6%
3642430 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.66 48.0 4.46e-01 85.7% 62.1%
3677429 1.1.7.67 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Trypsin_2 0.65 47.0 4.42e-01 85.7% 62.1%
3277727 4.8.1.43 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › RNHCP 0.65 37.0 3.41e-01 77.9% 46.3%
4944021 247.1.1.17 ↗ a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › ODP 0.61 44.0 3.15e-01 76.6% 59.6%
3967997 223.1.1.76 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_7 0.60 41.0 3.64e-01 71.4% 87.8%
3282745 1.1.12.0 ↗ beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins 0.59 46.0 4.02e-01 85.7% 55.0%
4964050 5.1.3.22 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › GSDH 0.58 46.0 2.95e-01 88.3% 47.6%
3072568 4052.1.1.1 ↗ beta complex topology › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA_dh_M 0.58 46.0 4.02e-01 90.9% 89.0%
3058418 1.1.13.2 ↗ beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_attach 0.57 46.0 4.27e-01 90.9% 93.1%
4287932 1.1.12.1 ↗ beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.55 44.0 3.71e-01 89.6% 58.6%
5069377 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.54 37.0 2.25e-01 71.4% 37.0%
5074909 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.53 41.0 3.96e-01 85.7% 79.5%
4932514 4.23.1.2 ↗ beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.53 37.0 3.26e-01 76.6% 47.5%
314827 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.52 35.0 2.23e-01 71.4% 44.5%
3944684 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 45.0 3.40e-01 100.0% 57.4%
3947609 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.51 40.0 2.69e-01 87.0% 65.4%
5010443 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.51 39.0 2.49e-01 85.7% 40.9%
3231090 391.1.1.0 ↗ few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.51 42.0 3.99e-01 97.4% 75.6%
None — 0.51 40.0 2.66e-01 87.0% 69.0%
3642749 223.1.1.93 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › DUF7950 0.50 39.0 3.34e-01 88.3% 95.7%