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OK625546.1__UTQ72807.1__X__00065

Bact-Vir

OK625546.1__UTQ72807.1__X__00065

Identity

Accession:
OK625546 ↗
Kingdom:
phage

Quality

84.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Mardecavirus› Vibrio_phage_vB_VpS_CC6

TaxID: 2961680

Cluster

View cluster (13 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 28-104
PDB
Domain cluster: rep: NC_047948.1__YP_009799981.1__HOT02_gp141__00140__D1-84
D2 high residues 110-160
PDB
Domain cluster: rep: MW825358.1__QVD49147.1__LUCX_77__00077__D78-117
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ousA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.71 49.0 4.18e-01 72.5% 75.6%
8ctsB01 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 48.0 4.04e-01 72.5% 71.3%
4bw5C00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.70 47.0 3.03e-01 70.6% 28.3%
3g7dA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.65 42.0 3.58e-01 90.2% 40.7%
2f8lA01 1.10.150.470 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.64 45.0 3.94e-01 76.5% 71.6%
2l3nA00 1.10.1050.20 Mainly Alpha › Orthogonal Bundle › Ribosomal Protein S4 Delta 41; Chain A, domain 1 › 0.63 45.0 3.68e-01 88.2% 39.4%
3ivpD01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.62 43.0 3.84e-01 86.3% 50.7%
2qhoD00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.61 43.0 4.40e-01 86.3% 79.6%
3e46A02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.61 43.0 4.58e-01 88.2% 93.0%
3fyaB00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 44.0 3.93e-01 90.2% 54.5%
3g7dA04 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.59 45.0 3.80e-01 86.3% 48.4%
5cbgA00 1.10.287.70 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.57 47.0 3.75e-01 92.2% 85.3%
4gewA01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.56 42.0 3.85e-01 90.2% 75.3%
2iw3A03 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.56 40.0 2.79e-01 82.4% 30.1%
1a7lA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 41.0 2.85e-01 82.4% 70.4%
4yg1A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 42.0 3.80e-01 82.4% 62.5%
1ixkA01 3.30.70.1170 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Sun protein; domain 3 0.56 38.0 3.13e-01 84.3% 34.3%
1a5tA02 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.55 39.0 4.07e-01 86.3% 100.0%
2o38A01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.54 40.0 3.74e-01 84.3% 63.1%
1zbsA03 1.10.720.160 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.54 40.0 3.40e-01 80.4% 57.3%
3pxpA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.53 41.0 3.47e-01 90.2% 49.5%
1xb2B01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.52 40.0 3.89e-01 94.1% 76.7%
3h5tA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.51 36.0 3.71e-01 80.4% 83.0%
ECOD (24)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4425883 103.5.1.2 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DmpG_comm 0.73 50.0 4.92e-01 72.5% 81.8%
3930280 101.1.9.0 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain 0.68 50.0 4.72e-01 80.4% 89.1%
4947306 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.66 46.0 3.79e-01 84.3% 39.0%
3808441 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.66 49.0 3.57e-01 82.4% 69.0%
4982623 4095.1.1.1 ↗ alpha bundles › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › ATP-dependent DNA ligase DNA-binding domain › DNA_ligase_A_N 0.65 46.0 4.02e-01 86.3% 48.8%
3226420 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.65 46.0 4.85e-01 84.3% 88.9%
4141968 2002.1.1.0 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels 0.65 46.0 2.82e-01 78.4% 13.0%
4147304 103.5.1.2 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DmpG_comm 0.65 52.0 4.98e-01 90.2% 81.7%
4319059 103.5.1.2 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like › DmpG_comm 0.64 52.0 4.88e-01 90.2% 77.8%
3315600 3764.1.1.0 ↗ alpha arrays › Repressor activator protein 1 (RAP1) helical bundle domain › Repressor activator protein 1 (RAP1) helical bundle domain › Repressor activator protein 1 (RAP1) helical bundle domain 0.62 44.0 4.40e-01 86.3% 74.5%
4665947 103.5.1.0 ↗ alpha arrays › RuvA-C › post-HMGL domain-like › post-HMGL domain-like 0.62 51.0 4.96e-01 94.1% 89.7%
3890655 3764.1.1.0 ↗ alpha arrays › Repressor activator protein 1 (RAP1) helical bundle domain › Repressor activator protein 1 (RAP1) helical bundle domain › Repressor activator protein 1 (RAP1) helical bundle domain 0.61 43.0 4.38e-01 84.3% 80.0%
3946162 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.60 41.0 4.12e-01 70.6% 84.0%
3251568 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.60 44.0 4.60e-01 90.2% 95.6%
3368577 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.58 45.0 4.30e-01 100.0% 72.3%
3813410 103.1.1.30 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › GIP1_N 0.58 42.0 4.10e-01 84.3% 70.0%
3260073 103.1.1.1 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UBA 0.58 42.0 4.12e-01 90.2% 71.7%
3593684 103.18.1.0 ↗ alpha arrays › RuvA-C 0.57 43.0 4.46e-01 100.0% 100.0%
146195 3764.1.1.0 ↗ alpha arrays › Repressor activator protein 1 (RAP1) helical bundle domain › Repressor activator protein 1 (RAP1) helical bundle domain › Repressor activator protein 1 (RAP1) helical bundle domain 0.57 40.0 4.02e-01 86.3% 78.8%
2876157 101.1.9.105 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › PF30176 0.56 42.0 4.21e-01 88.2% 100.0%
1002401 148.1.3.39 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › HolB_lid 0.55 39.0 4.09e-01 86.3% 97.6%
3702894 103.1.1.0 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.54 43.0 4.36e-01 100.0% 98.0%
4044021 103.1.1.50 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › EF-Ts_N 0.54 42.0 4.11e-01 100.0% 78.3%
4207508 103.1.1.84 ↗ alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › PF28540 0.53 41.0 4.11e-01 100.0% 87.3%