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OK655936.1__UEW68502.1__phiW14_00062__00062

Bact-Vir

OK655936.1__UEW68502.1__phiW14_00062__00062

Identity

Accession:
OK655936 ↗
Kingdom:
phage

Quality

80.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 193-338
PDB
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1cidA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 47.0 5.36e-01 93.2% 98.1%
4lr4A01 2.60.120.1420 Mainly Beta › Sandwich › Jelly Rolls › 0.63 42.0 4.01e-01 95.2% 55.7%
1nc7A00 2.60.290.11 Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › TM1070-like 0.61 39.0 4.35e-01 95.2% 81.0%
1nlqE00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.60 36.0 4.18e-01 94.5% 84.7%
2di8A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 33.0 3.94e-01 91.8% 80.9%
7k0xA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 32.0 4.11e-01 91.1% 96.2%
5l73A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 41.0 3.94e-01 100.0% 60.9%
4nx9A02 2.60.40.4390 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 42.0 4.58e-01 90.4% 92.6%
1xe0C00 2.60.120.340 Mainly Beta › Sandwich › Jelly Rolls › Nucleoplasmin core domain 0.57 34.0 3.94e-01 95.2% 83.2%
1sb7A01 3.30.2350.20 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › TruD, catalytic domain 0.55 34.0 3.06e-01 96.6% 42.9%
2ichA01 2.40.370.10 Mainly Beta › Beta Barrel › AttH-like fold › AttH-like domain 0.54 38.0 3.60e-01 71.2% 95.0%
3j4uH00 2.60.120.1110 Mainly Beta › Sandwich › Jelly Rolls › 0.54 40.0 4.06e-01 98.6% 79.3%
2c9aA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.53 39.0 3.79e-01 82.2% 68.5%
4dmiA02 2.60.120.1010 Mainly Beta › Sandwich › Jelly Rolls › 0.53 33.0 3.45e-01 94.5% 66.4%
1uwwB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 39.0 3.72e-01 95.9% 65.4%
4m9pA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 31.0 3.52e-01 92.5% 81.0%
3bp6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 30.0 3.68e-01 91.8% 93.2%
3o4oB03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 35.0 3.86e-01 91.8% 90.8%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.51 29.0 3.71e-01 78.8% 100.0%
3kf3A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.51 43.0 4.11e-01 94.5% 87.0%
2zewB00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 39.0 3.96e-01 82.2% 92.5%
2a5zA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 40.0 3.39e-01 83.6% 69.9%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3591997 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.69 43.0 4.54e-01 95.2% 69.2%
1111985 10.32.1.82 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM-like_2 0.65 43.0 3.89e-01 95.2% 48.7%
4009121 11.1.1.1285 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF31090 0.63 58.0 5.59e-01 100.0% 88.5%
1412423 10.32.1.72 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › TPPII_GBD 0.60 39.0 4.13e-01 94.5% 74.8%
5025469 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.59 39.0 4.08e-01 95.2% 74.4%
4177785 10.1.1.10 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.58 37.0 4.14e-01 95.2% 83.6%
3398675 4182.1.1.0 beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like 0.57 34.0 3.80e-01 83.6% 73.9%
3256321 11.2.1.17 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › NT-C2 0.54 36.0 3.72e-01 84.2% 71.1%
4944742 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 38.0 4.05e-01 89.0% 81.5%
3488117 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.52 46.0 4.36e-01 95.2% 91.2%
3909427 11.2.1.75 beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PF28455 0.52 37.0 3.57e-01 71.9% 100.0%
4019681 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.52 40.0 4.09e-01 85.6% 84.3%
3608442 10.1.1.0 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.51 46.0 4.08e-01 98.6% 76.7%
3811267 10.1.1.58 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neprosin 0.51 42.0 3.59e-01 89.7% 100.0%
4955347 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 35.0 3.98e-01 95.9% 97.1%
4326586 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 39.0 4.25e-01 87.0% 98.3%
5009882 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.51 38.0 3.83e-01 82.2% 78.6%
3477632 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.51 39.0 3.85e-01 95.2% 75.0%
3474665 10.1.1.17 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.51 43.0 4.01e-01 93.8% 85.3%
4186200 10.32.1.8 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 0.51 39.0 3.70e-01 81.5% 71.4%
4564179 10.1.1.26 beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.50 43.0 3.99e-01 94.5% 81.5%
D2 high residues 579-725
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF25670.2 best Phage_tail_C_2 113.1 1.40e-32 91.2% 98.5%
D3 medium residues 3-111
PDB
D4 medium residues 133-189
PDB
Domain cluster: representative
D5 medium residues 499-570
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3e4wA02 2.40.180.10 Mainly Beta › Beta Barrel › Catalase HpII, Chain A, domain 1 › Catalase core domain 0.64 51.0 3.69e-01 87.5% 93.7%
1ryp200 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.63 51.0 3.53e-01 87.5% 42.1%
1wznA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.63 45.0 4.98e-01 94.4% 96.4%
1rypA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.62 50.0 3.45e-01 87.5% 39.1%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.61 49.0 3.73e-01 88.9% 50.6%
6htnA01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.60 53.0 4.35e-01 100.0% 100.0%
4aq1A02 2.60.40.1080 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 47.0 4.38e-01 84.7% 79.1%
3bc9A01 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.60 47.0 4.31e-01 84.7% 78.5%
2yrlA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 45.0 4.34e-01 84.7% 81.9%
3irpX02 2.60.40.1290 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 45.0 3.58e-01 84.7% 81.1%
1h91A00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.58 46.0 3.45e-01 87.5% 37.2%
5icuA00 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.57 45.0 4.06e-01 86.1% 73.5%
1wbaA00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 48.0 3.73e-01 95.8% 88.3%
7c5yA02 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 48.0 3.81e-01 95.8% 99.3%
2kpnA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 41.0 4.02e-01 84.7% 71.4%
1ix2A00 2.60.40.1220 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 44.0 3.92e-01 84.7% 80.4%
1amiA04 3.20.19.10 Alpha Beta › Alpha-Beta Barrel › Aconitase; domain 4 › Aconitase, domain 4 0.56 46.0 3.29e-01 91.7% 83.3%
4m00A03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 4.23e-01 86.1% 75.6%
1lyvA00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.55 46.0 3.05e-01 91.7% 36.0%
3q48A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 37.0 3.61e-01 70.8% 96.4%
3kptA02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 43.0 3.44e-01 84.7% 79.4%
4twlA00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.54 47.0 3.34e-01 100.0% 55.6%
3ffzA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.54 44.0 3.39e-01 93.1% 75.8%
3hx8A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 46.0 3.88e-01 97.2% 92.2%
2xklA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 45.0 3.56e-01 91.7% 47.0%
1y8tA03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.54 42.0 3.94e-01 84.7% 94.3%
1c8zA00 3.20.90.10 Alpha Beta › Alpha-Beta Barrel › Tubby Protein; Chain A › Tubby Protein; Chain A 0.54 46.0 3.21e-01 100.0% 42.6%
1kopA00 3.10.200.10 Alpha Beta › Roll › Carbonic Anhydrase II › Alpha carbonic anhydrase 0.54 46.0 3.32e-01 98.6% 58.3%
4it4E01 2.40.30.320 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.52 42.0 3.70e-01 93.1% 98.2%
1uurA02 2.60.40.340 Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain 0.50 38.0 3.24e-01 84.7% 66.4%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3502044 243.19.1.0 a+b two layers › Cystatin-like › Phi ETA orf 56-like protein C-terminal domains › Phi ETA orf 56-like protein C-terminal domains 0.76 65.0 5.71e-01 93.1% 81.9%
3985126 520.1.1.0 beta sandwiches › gp9 N-terminal domain-like › gp9 N-terminal domain-related › gp9 N-terminal domain-related 0.74 58.0 5.62e-01 83.3% 93.8%
3245494 9.1.1.12 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd 0.65 53.0 3.83e-01 90.3% 45.4%
3458254 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 54.0 3.49e-01 100.0% 58.6%
5052127 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 47.0 3.96e-01 84.7% 85.4%
3511117 9.1.1.12 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › THAP4_heme-bd 0.59 51.0 3.88e-01 94.4% 46.1%
5029615 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 46.0 3.48e-01 84.7% 42.4%
5043415 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.59 50.0 4.26e-01 95.8% 79.2%
4017305 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 49.0 3.29e-01 94.4% 35.7%
3705644 9.1.1.0 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.58 47.0 3.78e-01 87.5% 84.3%
3707862 79.1.1.0 beta duplicates or obligate multimers › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain › Phage tail fiber protein trimerization domain 0.58 53.0 5.13e-01 100.0% 92.5%
3886492 4.1.1.154 beta barrels › SH3 › SH3 › SH3 › DUF4772 0.58 45.0 4.48e-01 95.8% 80.0%
3703649 292.2.1.0 a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.58 52.0 5.09e-01 100.0% 90.0%
1811514 11.1.1.65 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CopC 0.57 45.0 4.06e-01 86.1% 73.5%
1790370 5.1.2.7 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_130 0.57 48.0 3.14e-01 95.8% 61.8%
3190705 2004.1.1.433 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_23 0.57 46.0 2.67e-01 87.5% 19.5%
3659736 5.1.3.19 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Hira 0.56 49.0 3.55e-01 98.6% 62.9%
4937139 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 44.0 4.20e-01 86.1% 80.0%
3735632 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.55 48.0 3.37e-01 98.6% 98.7%
5044853 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 42.0 3.62e-01 84.7% 59.2%
3907176 4.1.1.248 beta barrels › SH3 › SH3 › SH3 › CABIT 0.54 44.0 4.19e-01 93.1% 90.0%
3254159 11.1.1.820 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Beta-sand_ComC_2nd 0.54 44.0 4.08e-01 91.7% 88.4%
4994978 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.54 44.0 2.84e-01 87.5% 36.3%
5024894 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 42.0 4.09e-01 84.7% 76.2%
3788662 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.54 43.0 4.21e-01 100.0% 80.0%
3255969 2004.1.1.174 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Elong_Iki1 0.53 43.0 2.90e-01 88.9% 93.9%
1181823 284.1.1.11 a+b two layers › FKBP-like › FKBP-like › FKBP-like › FKBP_N_2 0.53 40.0 3.43e-01 81.9% 87.5%
2754796 330.2.1.1 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) › Ribosomal_S30AE 0.53 47.0 4.21e-01 100.0% 88.2%
4968581 11.1.1.246 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Big_7 0.52 40.0 3.88e-01 84.7% 76.5%
3064463 6107.1.1.1 a+b two layers › a+b domain in platelet binding protein GspB › a+b domain in platelet binding protein GspB › a+b domain in platelet binding protein GspB › Rib 0.52 41.0 3.72e-01 86.1% 82.7%
4968439 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 41.0 3.88e-01 84.7% 74.1%
4271187 11.1.1.44 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Alpha_adaptinC2 0.52 45.0 3.63e-01 97.2% 81.4%
3281018 330.2.1.0 a+b two layers › dsRBD-like › Ribosome binding protein Y (YfiA homologue) › Ribosome binding protein Y (YfiA homologue) 0.52 46.0 4.12e-01 100.0% 90.0%
3683412 62.1.1.1 beta meanders › Carbonic anhydrase › Carbonic anhydrase › Carbonic anhydrase › Carb_anhydrase 0.52 45.0 3.35e-01 100.0% 66.7%
3255320 4096.1.1.1 a+b two layers › NAP-like › NAP-like › NAP-like › NAP 0.52 46.0 3.44e-01 100.0% 64.3%
5034639 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.62e-01 84.7% 64.0%
5027231 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 40.0 3.82e-01 84.7% 75.3%
5027435 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 39.0 3.58e-01 84.7% 68.4%
3410484 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.50 41.0 3.36e-01 93.1% 61.1%
5041727 2492.1.1.0 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.50 43.0 3.41e-01 100.0% 70.0%
3733248 243.1.1.0 a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.50 42.0 3.38e-01 100.0% 88.1%
3729945 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.50 43.0 3.63e-01 100.0% 61.5%