←Back to structures

OK896991.1__UDY80706.1__X__00037

Bact-Vir

OK896991.1__UDY80706.1__X__00037

Identity

Accession:
OK896991 ↗
Kingdom:
phage

Quality

94.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Geobacillus_phage_GR1

TaxID: 2890879

Cluster

View cluster (116 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-142
PDB
Domain cluster: rep: NC_048687.1__YP_009836231.1__HWB42_gp50__00050__D2-179
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kb2A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.86 81.0 7.24e-01 100.0% 91.8%
2jaqA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.82 77.0 6.60e-01 100.0% 95.2%
1p5zB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.81 75.0 6.09e-01 100.0% 95.2%
1zm7B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.81 69.0 5.82e-01 89.8% 92.9%
6ln3A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.77 73.0 6.09e-01 100.0% 93.1%
1khtB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.75 71.0 6.07e-01 100.0% 95.3%
6wctD01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.73 62.0 5.86e-01 100.0% 77.6%
1qf9A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.73 67.0 5.79e-01 100.0% 92.8%
1qhxA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.72 67.0 5.90e-01 100.0% 93.8%
3a4lB01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.70 66.0 5.83e-01 100.0% 88.2%
2bwjA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.70 65.0 5.56e-01 100.0% 91.3%
2qg6A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.69 64.0 5.65e-01 100.0% 91.8%
3v9pB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 63.0 5.34e-01 100.0% 96.0%
2vliB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 62.0 5.58e-01 100.0% 91.3%
4gp6A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.66 61.0 5.47e-01 100.0% 91.2%
2if2A00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.64 59.0 5.08e-01 100.0% 95.9%
3dc7A00 3.40.50.1110 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase 0.61 54.0 4.61e-01 100.0% 92.5%
1ckeA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 52.0 4.45e-01 100.0% 92.5%
2ox6D00 1.10.3100.10 Mainly Alpha › Orthogonal Bundle › Putative cytoplasmic protein › Putative cytoplasmic protein 0.55 39.0 3.66e-01 72.4% 67.7%
3nwoA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 48.0 3.73e-01 100.0% 86.3%
5yznA01 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.54 47.0 3.83e-01 97.6% 85.4%
4ap2B01 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.54 38.0 3.78e-01 72.4% 89.6%
3ojcA01 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 43.0 4.47e-01 100.0% 95.7%
3wxmB03 3.30.1330.30 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 0.53 34.0 3.66e-01 87.4% 74.8%
3qitB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.53 47.0 3.70e-01 100.0% 89.4%
3n75A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.53 45.0 4.48e-01 100.0% 90.7%
2p4gA00 3.40.430.10 Alpha Beta › 3-Layer(aba) Sandwich › Dihydrofolate Reductase, subunit A › Dihydrofolate Reductase, subunit A 0.52 42.0 3.40e-01 86.6% 60.9%
2wolA02 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.52 44.0 3.71e-01 95.3% 61.0%
4h18A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 46.0 3.52e-01 100.0% 73.3%
3lcvB01 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.52 25.0 3.47e-01 97.6% 100.0%
6ia6A01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.51 45.0 3.57e-01 97.6% 95.1%
3s7zA01 3.40.50.1860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 41.0 4.16e-01 100.0% 90.3%
3oziB00 3.40.50.10140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Toll/interleukin-1 receptor homology (TIR) domain 0.50 44.0 4.10e-01 100.0% 92.3%
1nmnA00 3.30.420.140 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain 0.50 41.0 4.23e-01 97.6% 95.0%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3273940 2004.1.1.70 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › dNK 0.84 79.0 6.56e-01 100.0% 89.5%
4990030 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.83 78.0 6.27e-01 100.0% 93.4%
3590072 2004.1.1.70 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › dNK 0.82 77.0 6.14e-01 100.0% 86.0%
4569464 2004.1.1.79 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin 0.81 76.0 6.48e-01 100.0% 95.4%
312817 2004.1.1.70 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › dNK 0.81 76.0 6.50e-01 100.0% 94.7%
4972761 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.80 74.0 5.96e-01 100.0% 91.2%
4972772 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.80 75.0 6.09e-01 100.0% 92.8%
4948439 2004.1.1.79 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin 0.80 75.0 6.31e-01 100.0% 96.5%
5057758 2004.1.1.79 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin 0.80 75.0 6.31e-01 100.0% 96.0%
4043560 2004.1.1.79 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin 0.79 74.0 6.29e-01 100.0% 96.0%
4518593 2004.1.1.79 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin 0.78 73.0 6.12e-01 100.0% 89.8%
5062006 2004.1.1.79 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin 0.78 72.0 5.93e-01 100.0% 92.3%
3269633 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.78 72.0 5.94e-01 100.0% 84.1%
5026353 2004.1.1.79 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin 0.78 73.0 6.28e-01 100.0% 93.7%
3279932 2004.1.1.202 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_28 0.77 72.0 5.73e-01 100.0% 80.8%
4933472 2004.1.1.79 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin 0.77 72.0 5.86e-01 100.0% 91.6%
5077286 2004.1.1.79 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Thymidylate_kin 0.77 71.0 5.87e-01 100.0% 91.4%
4938237 2004.1.1.191 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 0.77 73.0 6.28e-01 100.0% 97.3%
5054054 2004.1.1.191 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 0.76 71.0 6.25e-01 100.0% 96.7%
4061843 2004.1.1.106 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RapZ-like_N 0.75 71.0 6.40e-01 100.0% 90.9%
4971453 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.74 69.0 5.78e-01 100.0% 95.7%
4423734 2004.1.1.106 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RapZ-like_N 0.74 69.0 6.25e-01 100.0% 96.4%
4648027 2004.1.1.208 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_33 0.73 69.0 5.83e-01 100.0% 83.1%
4225764 2004.1.1.106 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RapZ-like_N 0.72 68.0 6.02e-01 100.0% 90.3%
3285822 2004.1.1.208 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_33 0.72 67.0 5.96e-01 100.0% 90.4%
5038506 2004.1.1.208 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_33 0.71 67.0 6.10e-01 100.0% 97.6%
4599949 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.71 65.0 5.69e-01 100.0% 95.7%
None — 0.70 65.0 5.40e-01 100.0% 80.0%
3190708 2004.1.1.41 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK 0.69 63.0 5.46e-01 100.0% 90.3%
4321081 2004.1.1.192 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 0.69 65.0 5.68e-01 100.0% 93.9%
4009789 2004.1.1.60 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SKI 0.69 63.0 5.53e-01 100.0% 86.5%
4062874 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.68 64.0 5.51e-01 100.0% 90.5%
3994515 2004.1.1.163 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › KTI12 0.68 63.0 5.31e-01 100.0% 87.8%
5032924 2004.1.1.208 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_33 0.68 63.0 5.44e-01 100.0% 90.0%
343827 2004.1.1.208 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_33 0.67 62.0 5.58e-01 100.0% 91.3%
5040835 2004.1.1.197 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_3 0.67 62.0 4.66e-01 100.0% 65.4%
4269138 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.67 63.0 5.39e-01 100.0% 89.5%
4265989 2004.1.1.80 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin 0.67 60.0 5.04e-01 100.0% 94.1%
4055310 2004.1.1.50 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin 0.66 62.0 5.35e-01 100.0% 89.9%
5050242 2004.1.1.50 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin 0.66 63.0 5.33e-01 100.0% 87.1%
987584 2004.1.1.208 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_33 0.66 61.0 5.47e-01 100.0% 91.2%
4942322 2004.1.1.191 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_17 0.65 60.0 5.26e-01 100.0% 94.6%
4605395 2004.1.1.59 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE 0.65 61.0 5.17e-01 100.0% 95.0%
4477375 2004.1.1.192 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_18 0.65 60.0 5.21e-01 100.0% 89.4%
5069145 2004.1.1.188 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Cytidylate_kin2 0.64 58.0 4.95e-01 100.0% 85.4%
4642905 2004.1.1.59 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE 0.64 59.0 5.07e-01 100.0% 94.9%
4554374 2004.1.1.59 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE 0.63 59.0 4.88e-01 100.0% 86.0%
4980329 2004.1.1.59 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE 0.63 59.0 5.04e-01 100.0% 93.8%
3543629 2004.1.1.50 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Guanylate_kin 0.62 57.0 5.01e-01 100.0% 88.1%
4594425 2004.1.1.59 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CoaE 0.62 58.0 4.97e-01 100.0% 94.9%
3861664 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 56.0 5.03e-01 100.0% 90.6%
3887434 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.62 56.0 5.02e-01 100.0% 87.8%
3285706 7579.1.1.9 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Esterase 0.62 54.0 4.07e-01 96.9% 78.8%
3964138 2006.1.4.4 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.57 44.0 3.97e-01 83.5% 98.3%
3579500 2004.1.1.119 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Gtr1_RagA 0.56 51.0 4.29e-01 100.0% 91.2%
4943578 301.1.1.0 ↗ a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like 0.56 35.0 3.89e-01 87.4% 80.0%
4238071 2006.1.4.4 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › 5_3_exonuc_N 0.56 43.0 3.92e-01 82.7% 69.7%
3271830 7590.1.1.7 ↗ a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › MID_MedPIWI 0.55 49.0 4.22e-01 100.0% 76.6%
3603246 2007.1.14.9 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › DUF2112 0.53 48.0 4.55e-01 100.0% 90.0%
3960413 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.52 47.0 3.50e-01 100.0% 73.2%
5011257 2006.1.4.13 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_9 0.50 35.0 3.54e-01 100.0% 70.0%