Back to structures

OK896991.1__UDY80731.1__X__00062

Bact-Vir

OK896991.1__UDY80731.1__X__00062

Identity

Accession:
OK896991 ↗
Kingdom:
phage

Quality

93.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-162
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00521.27 best DNA_topoisoIV 158.3 4.10e-46 93.2% 31.8%
D2 high residues 327-465
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00521.27 best DNA_topoisoIV 65.2 7.30e-18 89.2% 28.5%
D3 medium residues 172-313
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00521.27 best DNA_topoisoIV 99.1 3.90e-28 100.0% 33.2%
CATH (17)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qx3B03 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.78 54.0 6.36e-01 77.5% 100.0%
3l4jA04 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.77 54.0 6.31e-01 77.5% 100.0%
3va7A05 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.69 43.0 5.10e-01 73.2% 89.0%
2qmaA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.64 38.0 4.07e-01 72.5% 67.2%
4e1oA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.63 37.0 4.41e-01 73.9% 84.7%
4ofzA03 3.30.70.3080 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 31.0 3.87e-01 76.8% 76.4%
7xinA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.60 37.0 4.18e-01 70.4% 79.8%
4obuA01 3.90.1150.170 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.60 39.0 3.28e-01 72.5% 38.9%
5o5cB02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.60 37.0 3.86e-01 73.2% 66.4%
1js3A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.59 36.0 4.23e-01 73.2% 87.6%
6fyqA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.58 39.0 3.65e-01 75.4% 54.5%
6liuC02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 37.0 4.01e-01 73.2% 78.4%
1z1dB00 3.40.1310.20 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.56 37.0 3.84e-01 92.3% 71.0%
4g6tA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 36.0 3.79e-01 73.9% 72.7%
2p92A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.54 33.0 3.87e-01 76.1% 90.5%
2khdA00 3.30.70.860 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.52 36.0 4.07e-01 93.0% 94.4%
1zodA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 38.0 3.90e-01 78.2% 92.9%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3965475 4014.1.1.1 a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › DNA_topoisoIV 0.94 91.0 7.83e-01 100.0% 84.9%
2140592 4014.1.1.1 a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › DNA_topoisoIV 0.94 91.0 8.21e-01 100.0% 83.0%
4624017 4014.1.1.1 a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › DNA_topoisoIV 0.94 91.0 8.20e-01 100.0% 82.8%
3590557 4014.1.1.1 a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › DNA_topoisoIV 0.94 90.0 7.93e-01 100.0% 78.5%
4266765 4014.1.1.1 a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › DNA_topoisoIV 0.93 85.0 8.04e-01 100.0% 81.2%
4855517 101.1.2.9 alpha arrays › HTH › HTH › winged helix domain › DNA_topoisoIV 0.93 90.0 7.47e-01 100.0% 68.1%
3962339 4014.1.1.0 a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase 0.93 90.0 8.08e-01 100.0% 85.4%
396210 4014.1.1.1 a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › DNA_topoisoIV 0.93 90.0 7.31e-01 100.0% 65.8%
4946212 4014.1.1.1 a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › DNA_topoisoIV 0.93 89.0 8.00e-01 100.0% 85.4%
3277529 4014.1.1.1 a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › DNA_topoisoIV 0.83 74.0 7.08e-01 100.0% 83.1%
3789606 4014.1.1.0 a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase 0.78 71.0 6.66e-01 100.0% 81.2%
3998667 4014.1.1.1 a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › DNA_topoisoIV 0.77 72.0 6.43e-01 100.0% 72.3%
3188905 4014.1.1.1 a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › DNA_topoisoIV 0.75 71.0 6.47e-01 100.0% 82.2%
3096551 4014.1.1.1 a+b two layers › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › a+b domain in type II DNA topoisomerase › DNA_topoisoIV 0.73 68.0 6.14e-01 100.0% 83.8%
5011372 306.6.1.0 a+b two layers › Glucose permease domain IIB-like › PH0987 N-terminal domain-like › PH0987 N-terminal domain-like 0.66 40.0 4.79e-01 79.6% 89.5%
3815383 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 38.0 4.69e-01 75.4% 100.0%
4949872 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.61 42.0 4.42e-01 75.4% 76.2%
3282392 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.61 37.0 4.54e-01 73.2% 96.6%
4349478 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.60 38.0 4.59e-01 72.5% 98.9%
4948770 241.6.1.2 a+b two layers › Type III secretory system chaperone-like › Arp2/3 complex subunits › Arp2/3 complex subunits › ARPC4 0.60 36.0 4.08e-01 73.9% 77.3%
3958860 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.60 39.0 4.34e-01 72.5% 84.3%
3163830 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.60 38.0 4.11e-01 71.1% 74.2%
1401968 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.58 37.0 4.11e-01 75.4% 80.0%
143128 304.55.1.4 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Origin of replication-binding domains › T_Ag_DNA_bind 0.56 35.0 3.83e-01 76.8% 73.9%
3511004 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.56 35.0 4.23e-01 72.5% 98.9%
3426902 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.55 36.0 4.19e-01 72.5% 96.8%
3727686 3016.1.1.2 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › Aminotran_3 0.55 35.0 4.09e-01 72.5% 94.7%
3991783 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 38.0 3.46e-01 75.4% 83.7%
4969338 212.1.1.12 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › UPF0029 0.51 28.0 2.95e-01 77.5% 56.0%
3196501 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.51 38.0 3.02e-01 76.8% 85.3%
5058917 241.1.1.0 a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.50 34.0 3.56e-01 73.2% 75.2%
D4 medium residues 485-665
PDB
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3uc1A00 2.120.10.90 Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal 0.84 80.0 6.57e-01 100.0% 65.7%
3l6vA00 2.120.10.90 Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal 0.83 79.0 6.43e-01 100.0% 62.3%
1wp5A00 2.120.10.90 Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal 0.81 77.0 6.22e-01 100.0% 60.9%
1suuA00 2.120.10.90 Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal 0.78 73.0 6.16e-01 100.0% 64.8%
3no0A00 2.120.10.90 Mainly Beta › 6 Propeller › Neuraminidase › DNA gyrase/topoisomerase IV, subunit A, C-terminal 0.75 69.0 5.98e-01 100.0% 69.2%
1nr0A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 45.0 3.87e-01 100.0% 55.0%
3u4yA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 46.0 3.91e-01 100.0% 58.3%
1e2rA02 2.140.10.20 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase 0.51 45.0 3.53e-01 100.0% 42.6%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3445642 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.85 80.0 6.34e-01 100.0% 57.7%
5040277 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.84 79.0 6.40e-01 100.0% 61.8%
3969629 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.84 80.0 6.98e-01 100.0% 76.1%
4602375 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.83 79.0 6.19e-01 100.0% 58.0%
4261933 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.83 79.0 6.37e-01 100.0% 62.5%
5024979 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.83 79.0 6.44e-01 100.0% 62.9%
4075947 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.83 78.0 7.10e-01 100.0% 78.3%
4186650 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.83 79.0 6.40e-01 100.0% 62.4%
3164811 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.83 78.0 6.88e-01 100.0% 75.7%
4429482 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.83 78.0 6.25e-01 100.0% 62.1%
4271590 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.83 78.0 6.34e-01 100.0% 62.8%
5053478 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.83 78.0 6.36e-01 100.0% 63.8%
4589818 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.82 78.0 6.41e-01 100.0% 65.6%
4150603 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.82 78.0 6.31e-01 100.0% 61.6%
4569696 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.82 78.0 6.30e-01 100.0% 62.8%
4946214 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.82 78.0 6.27e-01 100.0% 62.8%
4102294 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.82 78.0 6.34e-01 100.0% 61.9%
5059693 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.82 78.0 6.43e-01 100.0% 67.0%
4388717 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.82 78.0 6.32e-01 100.0% 61.9%
4279289 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.82 77.0 6.21e-01 100.0% 59.7%
5007962 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.81 77.0 6.45e-01 100.0% 66.6%
2179 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.81 77.0 6.21e-01 100.0% 60.7%
4250515 5.2.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel 0.81 77.0 6.83e-01 100.0% 77.8%
3959000 5.2.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel 0.81 76.0 7.25e-01 100.0% 95.2%
4410663 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.81 77.0 6.90e-01 100.0% 76.2%
4935505 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.81 76.0 6.31e-01 100.0% 82.0%
4609257 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.81 76.0 6.19e-01 100.0% 61.1%
5082153 5.2.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel 0.81 76.0 6.27e-01 100.0% 62.9%
4074611 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.81 76.0 6.23e-01 100.0% 63.7%
4606923 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.81 76.0 6.12e-01 100.0% 59.4%
4493828 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.81 76.0 6.36e-01 100.0% 66.2%
4505869 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.80 75.0 6.16e-01 100.0% 63.5%
4331124 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.79 74.0 5.79e-01 100.0% 55.6%
4177906 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.79 74.0 6.05e-01 98.9% 67.7%
4028934 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.77 71.0 6.00e-01 100.0% 61.4%
4214118 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.76 71.0 6.10e-01 100.0% 69.2%
4421198 5.2.1.1 beta duplicates or obligate multimers › beta-propeller-like › beta-pinwheel › beta-pinwheel › DNA_gyraseA_C 0.75 65.0 6.24e-01 100.0% 80.5%
3572784 11.1.6.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › UPA domain 0.50 36.0 3.88e-01 73.5% 91.0%
3412506 5.1.3.162 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Ldl_recept_b, SGL 0.50 43.0 3.71e-01 100.0% 57.9%