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OK896991.1__UDY80745.1__X__00076
Bact-VirOK896991.1__UDY80745.1__X__00076
Identity
- Accession:
- OK896991 ↗
- Kingdom:
- phage
Quality
71.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-58
Domain cluster:
rep: IMGVR_UViG_3300023486_000047-3300023486-Ga0257044_1119816__D14-58
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01541.31 best | GIY-YIG | 35.1 | 1.90e-08 | 65.5% | 42.3% |
CATH (40)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4q9cA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.72 | 50.0 | 4.04e-01 | 72.7% | 62.9% |
| 3bp6B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.67 | 47.0 | 4.07e-01 | 74.5% | 67.0% |
| 2nmlA00 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.67 | 52.0 | 4.33e-01 | 87.3% | 92.0% |
| 6x4tA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.66 | 45.0 | 3.91e-01 | 70.9% | 75.3% |
| 2l97A01 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.65 | 45.0 | 3.83e-01 | 74.5% | 47.5% |
| 4i0kA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.65 | 45.0 | 3.78e-01 | 72.7% | 66.3% |
| 1s3lA00 | 3.60.21.10 | Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases | 0.65 | 44.0 | 3.08e-01 | 70.9% | 99.4% |
| 3a32A02 | 3.40.50.800 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Anticodon-binding domain | 0.65 | 55.0 | 4.09e-01 | 100.0% | 37.6% |
| 5r0dB01 | 2.60.34.20 | Mainly Beta › Sandwich › Substrate Binding Domain Of DNAk; Chain A, domain 1 › | 0.64 | 55.0 | 4.13e-01 | 100.0% | 43.4% |
| 4f80A02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 43.0 | 3.66e-01 | 74.5% | 63.4% |
| 5aykA07 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.61 | 51.0 | 4.10e-01 | 98.2% | 83.5% |
| 2rsmA00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.60 | 52.0 | 4.07e-01 | 96.4% | 47.0% |
| 3jtzA00 | 3.30.160.390 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain | 0.59 | 46.0 | 4.18e-01 | 89.1% | 79.2% |
| 6fezA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 49.0 | 4.24e-01 | 100.0% | 96.8% |
| 4htgA03 | 3.30.160.40 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain | 0.57 | 48.0 | 4.36e-01 | 100.0% | 68.4% |
| 4nnaA01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.56 | 43.0 | 2.70e-01 | 85.5% | 36.6% |
| 1q67A01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 40.0 | 3.07e-01 | 100.0% | 30.0% |
| 2ky6A00 | 2.40.290.30 | Mainly Beta › Beta Barrel › Ku70; Chain: A; Domain 2 › Mediator complex subunit 25, ACID domain | 0.56 | 44.0 | 3.20e-01 | 89.1% | 46.4% |
| 8b4hA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.56 | 48.0 | 3.50e-01 | 100.0% | 58.0% |
| 1v1cA00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 36.0 | 3.40e-01 | 83.6% | 52.9% |
| 1gofA02 | 2.130.10.80 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Galactose oxidase/kelch, beta-propeller | 0.55 | 43.0 | 2.67e-01 | 90.9% | 23.7% |
| 1x9mA01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 44.0 | 3.00e-01 | 100.0% | 22.6% |
| 6vp6A03 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.55 | 47.0 | 2.90e-01 | 96.4% | 20.6% |
| 1s2kA00 | 2.60.120.700 | Mainly Beta › Sandwich › Jelly Rolls › Peptidase G1 | 0.55 | 37.0 | 2.67e-01 | 74.5% | 91.0% |
| 2hjjA00 | 3.30.160.130 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › ykff protein like domains | 0.54 | 38.0 | 3.73e-01 | 100.0% | 66.7% |
| 1hczA02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.54 | 42.0 | 4.19e-01 | 98.2% | 81.4% |
| 4l8nA03 | 3.30.160.670 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.53 | 45.0 | 3.28e-01 | 100.0% | 54.9% |
| 3drnB00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.53 | 43.0 | 3.29e-01 | 100.0% | 76.7% |
| 2aehA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 40.0 | 3.37e-01 | 100.0% | 45.0% |
| 7oufB01 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.52 | 44.0 | 3.30e-01 | 100.0% | 51.7% |
| 4edjA02 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.52 | 43.0 | 3.72e-01 | 98.2% | 90.8% |
| 1mi8A00 | 2.170.16.10 | Mainly Beta › Beta Complex › Endonuclease - Pi-scei; Chain A, domain 1 › Hedgehog/Intein (Hint) domain | 0.52 | 41.0 | 3.14e-01 | 90.9% | 92.9% |
| 4cy8A01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.52 | 39.0 | 2.72e-01 | 92.7% | 36.4% |
| 2k4vA00 | 3.30.160.370 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 | 0.52 | 43.0 | 3.41e-01 | 100.0% | 47.2% |
| 5jtwA03 | 2.60.40.1940 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 44.0 | 3.43e-01 | 98.2% | 86.6% |
| 3venA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 42.0 | 2.85e-01 | 96.4% | 46.1% |
| 3wqbA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 38.0 | 2.94e-01 | 92.7% | 85.5% |
| 2rs7A01 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.50 | 42.0 | 3.92e-01 | 100.0% | 75.7% |
| 2f4mA02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.50 | 34.0 | 3.61e-01 | 74.5% | 80.0% |
| 1y96D00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 34.0 | 3.09e-01 | 72.7% | 71.1% |
ECOD (51)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4947741 | 821.1.1.17 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF27096 | 0.80 | 59.0 | 5.01e-01 | 78.2% | 58.8% |
| 5070409 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.76 | 57.0 | 4.86e-01 | 80.0% | 50.0% |
| 5030770 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.71 | 55.0 | 4.64e-01 | 85.5% | 52.6% |
| 4081797 | 3860.1.1.158 ↗ | alpha bundles › Myosin VI lever arm › Myosin VI lever arm › Myosin VI lever arm › ThrE | 0.71 | 41.0 | 2.95e-01 | 74.5% | 21.4% |
| 5000387 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.70 | 55.0 | 4.99e-01 | 87.3% | 88.0% |
| 5041034 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.67 | 48.0 | 4.07e-01 | 76.4% | 60.0% |
| 5071337 | 2484.1.1.49 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N | 0.66 | 56.0 | 4.48e-01 | 100.0% | 48.6% |
| 1593641 | 11.1.1.359 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › InlJ_IG | 0.66 | 46.0 | 4.73e-01 | 74.5% | 92.5% |
| 4944122 | 246.2.1.9 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 | 0.64 | 45.0 | 2.94e-01 | 74.5% | 88.0% |
| 3821886 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.64 | 53.0 | 4.75e-01 | 96.4% | 66.7% |
| 5005841 | 246.2.1.0 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases | 0.63 | 45.0 | 2.89e-01 | 74.5% | 86.5% |
| 4515517 | 821.1.1.9 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › PF30054 | 0.63 | 56.0 | 4.73e-01 | 98.2% | 60.0% |
| 3894031 | 330.1.1.6 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Staufen_C | 0.62 | 50.0 | 4.29e-01 | 100.0% | 56.5% |
| 3510695 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.62 | 49.0 | 4.34e-01 | 100.0% | 60.0% |
| 3929330 | 220.1.1.11 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › Rpn13_ADRM1_Pru | 0.61 | 45.0 | 3.47e-01 | 100.0% | 34.6% |
| 3740379 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.60 | 46.0 | 4.53e-01 | 100.0% | 76.7% |
| 5032735 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.60 | 42.0 | 3.48e-01 | 74.5% | 83.0% |
| 3615649 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 41.0 | 4.16e-01 | 98.2% | 72.7% |
| 5049116 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.60 | 53.0 | 3.68e-01 | 100.0% | 36.1% |
| 3271779 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.59 | 47.0 | 3.53e-01 | 100.0% | 34.5% |
| 3797649 | 330.1.1.0 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like | 0.59 | 52.0 | 4.15e-01 | 100.0% | 53.6% |
| 3705090 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.59 | 50.0 | 4.16e-01 | 98.2% | 53.0% |
| 5066490 | 3781.1.1.1 ↗ | a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N | 0.58 | 40.0 | 3.40e-01 | 72.7% | 75.6% |
| 3603768 | 2484.1.1.24 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 46.0 | 3.47e-01 | 100.0% | 35.0% |
| 3266842 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.57 | 48.0 | 3.63e-01 | 90.9% | 89.6% |
| 4126006 | 325.1.7.14 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › RPOC_hybrid | 0.57 | 45.0 | 4.28e-01 | 96.4% | 72.3% |
| 4945471 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.57 | 42.0 | 4.02e-01 | 96.4% | 66.2% |
| 3742330 | 220.1.1.8 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM | 0.57 | 43.0 | 3.52e-01 | 100.0% | 40.9% |
| 3585925 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.56 | 38.0 | 2.90e-01 | 76.4% | 56.4% |
| 3824961 | 11.10.1.5 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH_2 | 0.55 | 42.0 | 3.45e-01 | 85.5% | 100.0% |
| None | — | 0.55 | 46.0 | 2.82e-01 | 100.0% | 17.1% | |
| 3958897 | 4187.2.1.0 ↗ | a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 | 0.55 | 42.0 | 3.43e-01 | 89.1% | 45.8% |
| 4950038 | 330.4.1.1 ↗ | a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC | 0.54 | 42.0 | 3.85e-01 | 100.0% | 62.5% |
| 3595647 | 2004.1.1.26 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin | 0.54 | 48.0 | 2.87e-01 | 100.0% | 94.2% |
| 3598807 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 43.0 | 4.13e-01 | 98.2% | 81.2% |
| 5044742 | 375.1.1.95 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zinc_ribbon_13 | 0.54 | 38.0 | 3.64e-01 | 74.5% | 67.7% |
| 3933447 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.54 | 44.0 | 3.61e-01 | 92.7% | 66.7% |
| 3989984 | 2484.1.1.66 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_3 | 0.53 | 45.0 | 3.55e-01 | 100.0% | 59.2% |
| 3412668 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.53 | 48.0 | 3.68e-01 | 100.0% | 92.5% |
| 3251342 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.53 | 47.0 | 3.65e-01 | 100.0% | 83.3% |
| 3250197 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 39.0 | 2.40e-01 | 80.0% | 75.0% |
| 3437840 | 5.1.3.118 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 | 0.52 | 41.0 | 2.61e-01 | 89.1% | 87.4% |
| 3476015 | 220.1.1.160 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_MADD | 0.52 | 38.0 | 3.33e-01 | 100.0% | 47.4% |
| 3898197 | 220.1.1.192 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP_C | 0.52 | 40.0 | 3.11e-01 | 100.0% | 35.2% |
| 3203745 | 206.1.1.17 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Kdo | 0.52 | 41.0 | 2.67e-01 | 89.1% | 34.0% |
| 4207647 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.51 | 40.0 | 2.66e-01 | 89.1% | 36.3% |
| 3796346 | 220.1.1.1 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH | 0.51 | 42.0 | 3.17e-01 | 100.0% | 36.6% |
| 5001282 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.51 | 41.0 | 3.18e-01 | 98.2% | 62.1% |
| 3632753 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.50 | 43.0 | 2.88e-01 | 100.0% | 57.3% |
| 4968829 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.50 | 41.0 | 2.79e-01 | 94.5% | 31.8% |
| 3823661 | 5.1.5.96 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_3 | 0.50 | 41.0 | 2.64e-01 | 94.5% | 34.2% |