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OK896991.1__UDY80750.1__X__00081

Bact-Vir

OK896991.1__UDY80750.1__X__00081

Identity

Accession:
OK896991 ↗
Kingdom:
phage

Quality

88.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Geobacillus_phage_GR1

TaxID: 2890879

Cluster

View cluster (3 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-185
PDB
Domain cluster: rep: OP947166.1__WBC28587.1__TPMD04_36__00036__D165-348
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01520.24 best Amidase_3 124.9 5.20e-36 97.8% 99.4%
D2 high residues 205-263
PDB
Domain cluster: representative
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 66.0 6.34e-01 100.0% 84.8%
2krsA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 64.0 6.44e-01 98.3% 93.3%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 61.0 5.82e-01 100.0% 81.4%
2jxbA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 53.0 4.74e-01 100.0% 58.1%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 53.0 5.37e-01 100.0% 86.7%
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 48.0 5.07e-01 100.0% 88.2%
2ct4A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 54.0 5.09e-01 100.0% 74.3%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 45.0 4.69e-01 100.0% 75.0%
2l5qA01 2.30.30.730 Mainly Beta › Roll › SH3 type barrels. › 0.67 43.0 4.57e-01 100.0% 78.0%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 52.0 4.80e-01 100.0% 66.7%
1ri9A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 53.0 4.86e-01 100.0% 68.8%
2dmoA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 50.0 4.84e-01 100.0% 73.5%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.65 48.0 4.65e-01 100.0% 70.1%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.65 44.0 4.63e-01 100.0% 77.8%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 44.0 4.26e-01 100.0% 63.6%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.64 51.0 4.65e-01 100.0% 65.4%
3h41A02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 52.0 5.02e-01 100.0% 82.4%
1y0mA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 49.0 4.87e-01 100.0% 83.6%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.63 51.0 4.94e-01 100.0% 80.6%
4z88A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 54.0 5.24e-01 100.0% 90.8%
2hbpA00 2.30.30.700 Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 0.60 41.0 4.01e-01 100.0% 65.2%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.57 45.0 4.50e-01 100.0% 87.5%
2m9uA00 2.30.30.850 Mainly Beta › Roll › SH3 type barrels. › 0.55 38.0 3.41e-01 100.0% 49.4%
1whzA00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.55 36.0 3.45e-01 94.9% 58.0%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.54 43.0 2.95e-01 100.0% 24.4%
1dkiC01 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.54 42.0 3.04e-01 89.8% 76.3%
3p02A02 2.40.128.440 Mainly Beta › Beta Barrel › Lipocalin › Uncharacterised protein PF14274, DUF4361 0.52 42.0 3.23e-01 96.6% 85.1%
1fx7B03 2.30.30.90 Mainly Beta › Roll › SH3 type barrels. › Ferrous iron transport protein A (FeoA) 0.52 43.0 3.99e-01 100.0% 76.2%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 40.0 3.59e-01 93.2% 85.2%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2410169 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.78 70.0 6.23e-01 100.0% 72.3%
3587555 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.77 66.0 6.28e-01 100.0% 80.0%
3838574 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.77 64.0 6.66e-01 98.3% 100.0%
1673571 4.1.1.120 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_16 0.76 65.0 6.01e-01 100.0% 73.7%
3290509 4.11.1.1 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.75 49.0 4.25e-01 100.0% 44.4%
4520767 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.75 64.0 6.09e-01 100.0% 81.4%
3840076 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.74 63.0 6.33e-01 100.0% 95.0%
3839849 4.1.1.297 ↗ beta barrels › SH3 › SH3 › SH3 › YajC 0.73 45.0 4.35e-01 100.0% 55.4%
4196229 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.73 62.0 5.95e-01 100.0% 81.4%
3235419 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.73 56.0 5.58e-01 100.0% 81.7%
4084890 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.72 64.0 6.20e-01 100.0% 95.4%
4550532 4.1.1.58 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_3 0.71 62.0 5.42e-01 100.0% 64.4%
3222210 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.70 54.0 5.17e-01 100.0% 71.4%
3495480 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.70 54.0 5.44e-01 100.0% 83.3%
5063004 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 57.0 5.63e-01 100.0% 86.2%
3216433 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.69 45.0 5.31e-01 100.0% 100.0%
3573262 4.1.1.91 ↗ beta barrels › SH3 › SH3 › SH3 › hSH3 0.69 55.0 4.77e-01 100.0% 56.7%
3480350 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.69 54.0 5.23e-01 100.0% 76.9%
4627519 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 43.0 5.03e-01 98.3% 95.0%
3404936 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.69 45.0 4.86e-01 100.0% 80.0%
4862202 4.1.1.33 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.69 44.0 4.79e-01 98.3% 79.6%
4474739 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 53.0 4.96e-01 100.0% 68.0%
4030603 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.67 52.0 4.92e-01 100.0% 72.1%
3396896 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 55.0 5.17e-01 100.0% 74.7%
3599257 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 51.0 5.01e-01 100.0% 78.5%
3880325 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.66 52.0 4.97e-01 100.0% 74.3%
3529708 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 52.0 4.85e-01 100.0% 69.3%
4001172 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.65 53.0 5.03e-01 100.0% 75.7%
3414063 4.1.1.233 ↗ beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.65 47.0 4.84e-01 100.0% 81.8%
3928136 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 48.0 4.86e-01 100.0% 80.0%
3879172 4.1.1.54 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_2 0.62 51.0 4.96e-01 100.0% 83.1%
3627275 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 51.0 5.10e-01 100.0% 91.7%
3531894 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.62 52.0 5.14e-01 100.0% 89.2%
4679625 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 43.0 4.37e-01 100.0% 73.3%
3934192 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 47.0 4.74e-01 100.0% 81.7%
3937299 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 48.0 4.14e-01 100.0% 55.6%
3864347 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.60 51.0 5.02e-01 100.0% 89.2%
5071546 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.60 53.0 4.08e-01 100.0% 43.7%
3926672 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 47.0 4.61e-01 100.0% 78.5%
3928987 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 48.0 4.30e-01 100.0% 65.0%
3934126 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 44.0 4.46e-01 100.0% 81.7%
5055849 330.7.1.2 ↗ a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.58 36.0 3.53e-01 98.3% 56.9%
3546309 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.57 45.0 4.25e-01 100.0% 70.7%
3662319 4.1.1.13 ↗ beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.56 44.0 4.03e-01 100.0% 65.0%
3265019 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.54 43.0 3.71e-01 94.9% 74.8%
3631165 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 47.0 4.11e-01 100.0% 67.1%
3988872 211.1.1.8 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › CppA_N 0.52 39.0 3.69e-01 83.1% 67.1%
3402573 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 42.0 3.49e-01 94.9% 69.6%
3640801 4.1.1.232 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_Tf2-1 0.52 44.0 3.99e-01 100.0% 68.8%
4947695 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.52 43.0 4.08e-01 100.0% 77.3%
3214129 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.52 41.0 3.38e-01 94.9% 66.4%
D3 medium residues 275-364
PDB
Domain cluster: rep: MH884509.1__AYP68381.1__BboS125_00011__00011__D179-270
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF01476.27 best LysM 61.6 7.70e-17 46.7% 95.3%
PF01476.27 LysM 62.6 3.70e-17 46.7% 97.7%