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OK999978.1__UGL61730.1__SEA_GRUB_5__00005

Bact-Vir

OK999978.1__UGL61730.1__SEA_GRUB_5__00005

Identity

Accession:
OK999978 ↗
Kingdom:
phage

Quality

89.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Microwolfvirus› Mycobacterium_phage_Grub

TaxID: 2894294

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 42-99
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF21722.5 best Gly_rich_2 45.5 1.30e-11 100.0% 22.8%
CATH (10)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2l7eA00 2.60.40.1970 Mainly Beta › Sandwich › Immunoglobulin-like › YEATS domain 0.62 42.0 3.37e-01 70.7% 35.0%
1ohgA01 3.30.2400.10 Alpha Beta › 2-Layer Sandwich › Major capsid protein gp5 fold › Major capsid protein gp5 0.56 45.0 3.46e-01 91.4% 94.5%
3wlvA00 3.10.270.10 Alpha Beta › Roll › Urate Oxidase › Urate Oxidase; 0.55 46.0 2.95e-01 98.3% 27.7%
7me5A01 2.60.40.2170 Mainly Beta › Sandwich › Immunoglobulin-like › Wnt, WIF domain 0.53 42.0 3.31e-01 91.4% 42.5%
3pg6B00 3.30.390.130 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › 0.53 42.0 3.26e-01 87.9% 41.8%
1vcaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 3.53e-01 93.1% 55.5%
7uzsX03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.34e-01 89.7% 51.3%
5wm1A05 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.51 45.0 3.57e-01 98.3% 69.2%
1se8A02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 36.0 3.04e-01 86.2% 40.5%
6vg1A04 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.51 39.0 3.33e-01 89.7% 49.0%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4889260 2485.3.1.12 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › DUF6260 0.62 47.0 3.18e-01 89.7% 41.1%
2995627 2485.3.1.7 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Major_capside 0.59 46.0 3.00e-01 89.7% 83.3%
3729959 304.109.1.1 ↗ a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 0.57 40.0 2.89e-01 74.1% 24.4%
3632840 12.3.1.2 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Cu_amine_oxid 0.54 44.0 2.79e-01 98.3% 75.3%
3688400 73.1.1.1 ↗ beta sandwiches › SMAD/FHA domain › SMAD/FHA domain › SMAD/FHA domain › FHA 0.53 42.0 3.27e-01 94.8% 36.8%
3088027 2485.3.1.3 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_capsid 0.52 39.0 2.73e-01 93.1% 84.3%
3231222 10.35.1.1 ↗ beta sandwiches › jelly-roll › ER-derived vesicles protein Erv41p lumenal domain › ER-derived vesicles protein Erv41p lumenal domain › COPIIcoated_ERV,ERGIC_N 0.52 45.0 3.07e-01 100.0% 76.7%
3110810 2485.3.1.0 ↗ a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 0.51 40.0 2.70e-01 91.4% 84.4%
4168202 101.17.1.0 ↗ alpha arrays › HTH › IHF-like DNA-binding proteins › IHF-like DNA-binding proteins 0.50 36.0 3.20e-01 79.3% 50.5%
3668394 9.14.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Uncharacterized protein YLR301W › Uncharacterized protein YLR301W 0.50 36.0 3.08e-01 75.9% 51.6%
4882343 2003.1.1.59 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › NAD_binding_5 0.50 38.0 2.50e-01 89.7% 37.9%