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OL412002.1__UMO76483.1__DNAM_580__00055

Bact-Vir

OL412002.1__UMO76483.1__DNAM_580__00055

Identity

Accession:
OL412002 ↗
Kingdom:
phage

Quality

89.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pseudomonas_phage_BroderSalsa

TaxID: 2894361

Cluster

View cluster (5 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-51
PDB
Domain cluster: rep: IMGVR_UViG_3300005906_000005-3300005906-Ga0075127_10004189__D7-59
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2fqpA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.75 51.0 4.00e-01 100.0% 35.8%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.68 57.0 5.51e-01 100.0% 90.9%
2vhjA02 2.30.270.20 Mainly Beta › Roll › duf1285 protein fold › 0.68 48.0 4.43e-01 72.9% 91.9%
1aqtA01 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.66 56.0 4.70e-01 100.0% 83.0%
4hb9A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.65 55.0 3.26e-01 95.8% 37.9%
2kzbA00 2.60.40.2830 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 51.0 3.89e-01 87.5% 81.6%
2e5yA01 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.65 53.0 4.53e-01 100.0% 80.7%
3luuA00 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.64 48.0 4.05e-01 85.4% 76.4%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 53.0 5.13e-01 100.0% 86.2%
4xtvB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.64 49.0 4.94e-01 100.0% 89.6%
5zwlE01 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.64 52.0 4.47e-01 100.0% 80.7%
6focH01 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.64 53.0 4.29e-01 100.0% 70.5%
4tkcA00 2.90.10.10 Mainly Beta › Orthogonal Prism › Agglutinin, subunit A › Bulb-type lectin domain 0.64 53.0 4.03e-01 93.8% 55.1%
1h8eH00 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.64 52.0 4.43e-01 100.0% 84.3%
3j7aF02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.64 42.0 4.21e-01 72.9% 62.7%
1x05A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 51.0 3.90e-01 95.8% 76.7%
2eayB02 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 48.0 4.87e-01 100.0% 87.8%
4c92F00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 53.0 4.65e-01 100.0% 80.5%
7mhwA01 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.63 53.0 4.32e-01 93.8% 92.1%
2hldH01 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.62 50.0 4.35e-01 97.9% 86.9%
3pvlA04 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 53.0 4.27e-01 100.0% 69.7%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.62 46.0 3.86e-01 100.0% 43.1%
1aogA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 52.0 3.98e-01 100.0% 96.7%
1ljoA00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 51.0 4.51e-01 100.0% 78.7%
1xezA04 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.60 49.0 3.69e-01 97.9% 80.0%
3ci0J02 2.10.70.20 Mainly Beta › Ribbon › Complement Module; domain 1 › gspk-gspi-gspj complex like domains 0.59 35.0 3.54e-01 100.0% 54.0%
4a53A01 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 4.47e-01 100.0% 79.0%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.59 46.0 4.61e-01 100.0% 84.0%
3jyyA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.58 44.0 3.31e-01 85.4% 58.2%
6az1E02 2.40.50.740 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Ribosomal protein S4, central domain 0.58 39.0 3.90e-01 72.9% 64.7%
5dn6I00 2.60.15.10 Mainly Beta › Sandwich › ATP Synthase; domain 1 › F0F1 ATP synthase delta/epsilon subunit, N-terminal 0.57 44.0 3.93e-01 89.6% 89.3%
6m3aA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 43.0 3.97e-01 85.4% 95.5%
3dueA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.57 43.0 3.36e-01 89.6% 40.9%
4ljzC06 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 41.0 3.70e-01 83.3% 85.3%
2dazA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.56 43.0 3.40e-01 89.6% 54.5%
1whmA01 2.30.30.190 Mainly Beta › Roll › SH3 type barrels. › CAP Gly-rich-like domain 0.56 45.0 4.10e-01 100.0% 98.6%
3in6A02 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.55 48.0 3.63e-01 100.0% 42.7%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.54 42.0 4.32e-01 100.0% 91.5%
1vl7A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 46.0 3.40e-01 100.0% 36.3%
3cp7A01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 46.0 3.56e-01 100.0% 43.2%
3mp6A05 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 44.0 4.13e-01 100.0% 74.6%
2ou5A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 46.0 3.17e-01 100.0% 30.9%
3hx1B00 2.60.200.20 Mainly Beta › Sandwich › Tumour Suppressor Smad4 › 0.53 47.0 3.65e-01 100.0% 95.3%
4cbpB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.10e-01 79.2% 75.0%
4iupB01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 43.0 4.04e-01 97.9% 87.1%
4b9wA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 43.0 4.15e-01 100.0% 83.9%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 44.0 2.93e-01 100.0% 23.6%
7q61A01 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 38.0 3.08e-01 85.4% 93.6%
2qggA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.51 43.0 3.55e-01 100.0% 52.7%
4xhyA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 42.0 3.03e-01 100.0% 31.7%
2ig6A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 43.0 3.14e-01 100.0% 33.6%
6i3gA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.50 42.0 3.25e-01 100.0% 85.6%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5049872 56.2.1.0 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT 0.70 60.0 5.34e-01 100.0% 77.1%
None — 0.69 58.0 3.68e-01 97.9% 55.5%
4313160 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.69 58.0 3.43e-01 97.9% 48.7%
4670927 2003.1.3.1 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › DAO 0.68 58.0 3.71e-01 97.9% 56.2%
4030765 378.1.1.11 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclea_NS_2 0.68 50.0 3.38e-01 79.2% 32.8%
4219566 56.1.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › ATP-synt_DE_N 0.67 57.0 4.85e-01 100.0% 84.7%
4644446 56.1.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › ATP-synt_DE_N 0.66 54.0 4.70e-01 97.9% 88.7%
4933326 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.65 44.0 3.64e-01 100.0% 38.6%
4928472 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.64 43.0 3.71e-01 100.0% 42.5%
3898438 56.1.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › ATP-synt_DE_N 0.64 52.0 4.45e-01 100.0% 83.3%
5027750 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 53.0 5.19e-01 100.0% 87.3%
3223830 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 45.0 4.48e-01 83.3% 72.0%
4635165 56.1.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › ATP-synt_DE_N 0.64 53.0 4.52e-01 100.0% 83.5%
5003618 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.64 48.0 4.88e-01 100.0% 93.3%
4953223 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.64 49.0 4.94e-01 100.0% 90.0%
4985100 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 49.0 4.93e-01 100.0% 90.0%
4288670 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.63 51.0 3.13e-01 95.8% 47.6%
4155945 56.1.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › ATP-synt_DE_N 0.63 50.0 4.40e-01 100.0% 85.9%
4034575 56.1.1.1 ↗ beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › Epsilon subunit of F1F0-ATP synthase-N › ATP-synt_DE_N 0.62 51.0 4.42e-01 100.0% 84.7%
4953913 4.1.1.19 ↗ beta barrels › SH3 › SH3 › SH3 › LSM 0.62 51.0 4.81e-01 100.0% 78.3%
5055783 101.1.2.70 ↗ alpha arrays › HTH › HTH › winged helix domain › PqqD 0.61 43.0 3.58e-01 100.0% 40.0%
4999741 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 52.0 4.48e-01 100.0% 61.3%
3923766 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 51.0 3.98e-01 100.0% 67.8%
2557227 4.7.1.2 ↗ beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › ROF 0.61 49.0 4.41e-01 100.0% 66.2%
5024227 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 49.0 4.67e-01 100.0% 82.5%
3653704 2498.1.1.91 ↗ mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › TAF2_3rd 0.60 47.0 2.94e-01 100.0% 15.8%
4287737 702.1.1.4 ↗ beta duplicates or obligate multimers › beta-hairpin stack › beta-hairpin stack › beta-hairpin stack 0.60 45.0 2.77e-01 83.3% 34.7%
858452 4.1.1.476 ↗ beta barrels › SH3 › SH3 › SH3 › PF30873 0.60 47.0 4.02e-01 100.0% 51.0%
3624661 2003.1.2.24 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.60 50.0 3.60e-01 97.9% 86.0%
3284034 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.58 43.0 2.99e-01 89.6% 71.0%
5058457 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.58 48.0 4.43e-01 100.0% 75.4%
4216608 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.57 41.0 3.66e-01 83.3% 82.5%
4952899 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 45.0 3.86e-01 100.0% 53.8%
3897826 220.1.1.161 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 0.57 50.0 3.79e-01 100.0% 60.0%
4044269 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.57 48.0 4.32e-01 100.0% 70.0%
4380974 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.56 49.0 3.44e-01 100.0% 81.9%
3721465 708.1.2.6 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › Mss4-like › GFA 0.56 43.0 3.26e-01 97.9% 64.7%
3385776 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.56 49.0 3.55e-01 100.0% 39.3%
4856681 220.1.1.36 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_12 0.55 46.0 3.49e-01 100.0% 68.0%
4188663 1.1.7.11 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.55 47.0 3.81e-01 100.0% 51.6%
3645174 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.54 44.0 3.08e-01 100.0% 26.8%
4298074 71.1.1.3 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.54 47.0 3.23e-01 100.0% 79.4%
4988336 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.54 47.0 3.43e-01 100.0% 36.3%
2646217 5.1.2.34 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › PQQ_2 0.54 48.0 4.35e-01 100.0% 93.8%
4937731 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 43.0 4.09e-01 95.8% 78.3%
5019852 1.1.17.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.53 44.0 2.88e-01 100.0% 21.4%
540 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.53 41.0 4.19e-01 100.0% 95.8%
3626694 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.53 41.0 3.51e-01 100.0% 50.0%
3959055 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.52 45.0 4.13e-01 100.0% 75.0%
4929875 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.52 42.0 3.50e-01 100.0% 69.0%
3238955 4.1.1.377 ↗ beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.52 42.0 3.72e-01 100.0% 66.3%
3964422 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.51 41.0 3.02e-01 100.0% 53.1%
4204596 3744.1.1.1 ↗ a+b two layers › Photosystem II antenna protein PsbB insertion domain › Photosystem II antenna protein PsbB insertion domain › Photosystem II antenna protein PsbB insertion domain › PSII 0.51 45.0 3.36e-01 100.0% 75.0%
4129418 1.1.5.0 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.51 44.0 3.23e-01 100.0% 36.3%
4999430 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.51 42.0 3.32e-01 100.0% 40.8%
2893010 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.51 40.0 3.98e-01 100.0% 88.9%
2575643 4.1.1.8 ↗ beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.51 40.0 3.69e-01 100.0% 66.7%
3183322 4081.1.1.5 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.51 43.0 2.81e-01 100.0% 21.3%
3389161 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 40.0 3.34e-01 100.0% 47.4%