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OL436245.1__UGL60454.1__X__00007
Bact-VirOL436245.1__UGL60454.1__X__00007
Identity
- Accession:
- OL436245 ↗
- Kingdom:
- phage
Quality
92.7
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Herelleviridae›
Baoshanvirus›
Staphylococcus_phage_vB_SurM-PSU4
TaxID: 2894348
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-77_136-158
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23864.2 best | DUF7222 | 48.5 | 1.30e-12 | 100.0% | 95.4% |
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1c5aA00 | 1.20.91.20 | Mainly Alpha › Up-down Bundle › Influenza Virus Matrix Protein; Chain A, domain 1 › Anaphylotoxins (complement system) | 0.69 | 31.0 | 3.80e-01 | 99.0% | 64.6% |
| 3rv0C02 | 1.10.1520.10 | Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain | 0.64 | 46.0 | 4.13e-01 | 76.0% | 81.2% |
| 1vctA01 | 1.20.58.220 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 | 0.54 | 30.0 | 2.98e-01 | 92.0% | 50.5% |
| 1tt5C01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 39.0 | 2.82e-01 | 82.0% | 33.5% |
| 1u7kA00 | 1.10.375.10 | Mainly Alpha › Orthogonal Bundle › Human Immunodeficiency Virus Type 1 Capsid Protein › Human Immunodeficiency Virus Type 1 Capsid Protein | 0.51 | 41.0 | 3.80e-01 | 90.0% | 84.7% |
| 2uv8A07 | 6.10.140.1410 | Special › Helix non-globular › Helix Hairpins › | 0.50 | 31.0 | 3.42e-01 | 83.0% | 74.1% |
ECOD (6)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3279209 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.73 | 40.0 | 3.25e-01 | 100.0% | 30.3% |
| 3285760 | 101.1.2.48 ↗ | alpha arrays › HTH › HTH › winged helix domain › PadR | 0.72 | 39.0 | 3.18e-01 | 100.0% | 29.4% |
| 3513582 | 192.8.1.36 ↗ | alpha bundles › Long alpha-hairpin › Eukaryotic DNA topoisomerase I, dispensable insert domain › Eukaryotic DNA topoisomerase I, dispensable insert domain › M_domain | 0.63 | 35.0 | 3.42e-01 | 100.0% | 49.1% |
| 3703911 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 38.0 | 2.94e-01 | 74.0% | 78.2% |
| 5018475 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.52 | 44.0 | 4.17e-01 | 98.0% | 76.7% |
| 4652188 | 171.1.1.1 ↗ | alpha arrays › RNase III catalytic domain-like › RNase III catalytic domain-like › RNase III catalytic domain-like › Ribonuclease_3 | 0.51 | 42.0 | 3.75e-01 | 92.0% | 84.1% |
D2
medium
residues 78-135
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4jykA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.77 | 48.0 | 4.85e-01 | 70.7% | 63.8% |
| 4rv5A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.72 | 62.0 | 4.21e-01 | 96.6% | 36.4% |
| 1l8sA00 | 1.20.90.10 | Mainly Alpha › Up-down Bundle › Phospholipase A2 › Phospholipase A2 domain | 0.68 | 47.0 | 3.63e-01 | 72.4% | 53.2% |
| 2nn4A00 | 1.10.287.760 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › YqgQ-like | 0.67 | 38.0 | 3.79e-01 | 70.7% | 53.2% |
| 4i8oA03 | 1.10.8.1130 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Bacterial toxin RNase RnlA/LsoA, C-terminal Dmd-binding domain | 0.65 | 44.0 | 4.26e-01 | 70.7% | 62.7% |
| 4hiaA00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.63 | 43.0 | 3.10e-01 | 72.4% | 25.6% |
| 3ilxA02 | 1.10.287.2170 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.63 | 41.0 | 4.64e-01 | 72.4% | 88.6% |
| 3mxtA02 | 3.30.1300.10 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › Pantoate-beta-alanine ligase, C-terminal domain | 0.62 | 41.0 | 3.48e-01 | 70.7% | 40.0% |
| 6mh4A03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.60 | 43.0 | 3.93e-01 | 75.9% | 70.9% |
| 2efeA01 | 1.10.246.120 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.59 | 44.0 | 4.03e-01 | 91.4% | 59.3% |
| 3bk2A03 | 3.10.20.580 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.59 | 43.0 | 3.65e-01 | 79.3% | 48.5% |
| 2qvwB05 | 1.10.1740.150 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.58 | 41.0 | 3.79e-01 | 75.9% | 56.6% |
| 3of4A00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.58 | 40.0 | 2.77e-01 | 72.4% | 44.9% |
| 3id7A00 | 3.20.20.140 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases | 0.57 | 40.0 | 2.46e-01 | 72.4% | 10.7% |
| 3b0cW00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.57 | 48.0 | 4.53e-01 | 100.0% | 86.3% |
| 1f14A01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 48.0 | 3.31e-01 | 94.8% | 61.2% |
| 2fq4A02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.54 | 43.0 | 3.37e-01 | 91.4% | 89.8% |
| 1eteA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.53 | 41.0 | 3.17e-01 | 84.5% | 52.2% |
| 4i9oA00 | 1.10.246.20 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain | 0.50 | 42.0 | 3.90e-01 | 100.0% | 80.8% |
| 3aogA01 | 1.10.8.1210 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.50 | 34.0 | 3.36e-01 | 70.7% | 64.5% |
ECOD (10)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4328219 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.72 | 46.0 | 3.50e-01 | 70.7% | 28.1% |
| 4940509 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.69 | 53.0 | 4.41e-01 | 82.8% | 49.0% |
| 5072453 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.67 | 45.0 | 4.01e-01 | 70.7% | 50.6% |
| 3698416 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.64 | 51.0 | 3.44e-01 | 91.4% | 76.2% |
| 4343262 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.63 | 42.0 | 4.12e-01 | 70.7% | 66.2% |
| 3179646 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.62 | 44.0 | 2.62e-01 | 75.9% | 9.5% |
| 4131981 | 3050.1.1.7 ↗ | alpha bundles › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal protein L19 (L19e) C-terminal domain › Ribosomal_L19e_C | 0.58 | 47.0 | 4.23e-01 | 91.4% | 69.4% |
| 2617397 | 3078.1.1.1 ↗ | extended segments › RNA polymerase PB1 C-terminal fragment › RNA polymerase PB1 C-terminal fragment › RNA polymerase PB1 C-terminal fragment › Flu_PB1 | 0.56 | 39.0 | 3.39e-01 | 70.7% | 50.0% |
| 4318142 | 230.3.1.1 ↗ | a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS | 0.53 | 46.0 | 3.53e-01 | 100.0% | 40.7% |
| 3323850 | 601.1.1.58 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › FPP | 0.51 | 42.0 | 3.92e-01 | 91.4% | 97.3% |