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OL436245.1__UGL60640.1__X__00193

Bact-Vir

OL436245.1__UGL60640.1__X__00193

Identity

Accession:
OL436245 ↗
Kingdom:
phage

Quality

84.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Baoshanvirus› Staphylococcus_phage_vB_SurM-PSU4

TaxID: 2894348

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 17-115
PDB
Domain cluster: rep: OP056089.1__UYD72102.1__X__00002__D5-102
CATH (5)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM01 3.90.75.20 Alpha Beta › Alpha-Beta Complex › Homing Intron 3 (I-Ppo) Encoded Endonuclease; Chain A › 0.87 75.0 7.32e-01 100.0% 84.0%
7r97A02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 33.0 3.84e-01 92.9% 85.3%
2ky8A00 3.30.890.10 Alpha Beta › 2-Layer Sandwich › Methyl-cpg-binding Protein 2; Chain A › Methyl-cpg-binding Protein 2; Chain A 0.54 35.0 4.06e-01 77.8% 94.3%
2lrsA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.52 31.0 3.57e-01 93.9% 83.1%
2hzrA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 37.0 3.27e-01 80.8% 74.5%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3719595 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.56 28.0 3.33e-01 91.9% 71.7%
3502939 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.54 33.0 3.48e-01 82.8% 66.7%
3606311 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.53 31.0 3.51e-01 92.9% 76.0%
5044392 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 26.0 3.17e-01 90.9% 78.2%
5044391 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.52 27.0 3.35e-01 92.9% 92.0%
D2 high residues 129-197
PDB
Domain cluster: representative
CATH (41)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4fffA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.65 45.0 3.43e-01 72.5% 70.6%
1k32A01 2.120.10.60 Mainly Beta › 6 Propeller › Neuraminidase › Tricorn protease N-terminal domain 0.64 44.0 2.97e-01 72.5% 96.3%
3ugfB02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.63 45.0 3.31e-01 73.9% 76.8%
4eqaC00 2.40.128.650 Mainly Beta › Beta Barrel › Lipocalin › 0.63 45.0 3.48e-01 75.4% 56.7%
5llwA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.63 48.0 4.39e-01 82.6% 87.0%
1st8A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.63 45.0 3.31e-01 76.8% 53.7%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.61 34.0 3.86e-01 82.6% 78.3%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.61 51.0 4.81e-01 91.3% 86.6%
3kf3A02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.59 42.0 3.15e-01 75.4% 43.5%
3tc9A02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.59 43.0 2.71e-01 76.8% 18.0%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 42.0 2.68e-01 75.4% 98.0%
1y4oA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.57 42.0 3.70e-01 78.3% 65.4%
1k90A02 3.90.1760.10 Alpha Beta › Alpha-Beta Complex › Adenylylcyclase toxin fold › Anthrax toxin, edema factor, central domain 0.57 48.0 3.71e-01 95.7% 91.2%
4cc9A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 43.0 2.83e-01 82.6% 92.5%
2z15A00 3.90.640.90 Alpha Beta › Alpha-Beta Complex › Actin; Chain A, domain 4 › Anti-proliferative protein, N-terminal domain 0.56 45.0 3.83e-01 89.9% 91.6%
4ci8A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 41.0 2.70e-01 79.7% 28.8%
4mxtA00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.55 49.0 3.62e-01 100.0% 66.8%
3nvnA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 46.0 2.86e-01 91.3% 96.9%
8hmcA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 39.0 2.47e-01 75.4% 16.1%
4xpmB00 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.55 40.0 4.04e-01 79.7% 88.1%
4aezA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 39.0 2.51e-01 76.8% 16.0%
7dpyB01 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.55 45.0 4.31e-01 92.8% 96.4%
3kyeA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.54 44.0 3.86e-01 98.6% 99.2%
3v7dD02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 43.0 2.75e-01 87.0% 98.0%
3v9fA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 45.0 2.93e-01 91.3% 97.7%
3he1A00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.53 45.0 3.53e-01 92.8% 70.7%
4a2lB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 42.0 2.74e-01 85.5% 97.4%
1jqpA01 2.40.128.80 Mainly Beta › Beta Barrel › Lipocalin › Cathepsin C, exclusion domain 0.53 44.0 3.80e-01 92.8% 91.1%
1skoA00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.53 42.0 3.69e-01 97.1% 99.2%
2z3zA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.52 45.0 2.76e-01 94.2% 96.5%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.52 37.0 2.41e-01 75.4% 18.4%
6qk7A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 44.0 2.76e-01 92.8% 98.5%
1aqcB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 44.0 3.66e-01 95.7% 79.5%
1p6pA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 42.0 3.59e-01 97.1% 94.4%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.51 46.0 3.73e-01 100.0% 71.1%
5gaeG01 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.51 37.0 3.55e-01 95.7% 66.7%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.51 35.0 2.23e-01 71.0% 16.7%
2frxA02 3.10.450.720 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.51 39.0 3.02e-01 85.5% 71.3%
6mv2A01 2.60.40.790 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 44.0 3.87e-01 97.1% 72.5%
1lfoA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.50 40.0 3.49e-01 97.1% 70.1%
2jpiA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.50 33.0 3.06e-01 100.0% 49.0%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3933565 5.1.4.229 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EMC1_N 0.74 43.0 2.63e-01 94.2% 10.5%
4992030 632.1.1.40 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › DUF3536 0.71 55.0 3.89e-01 87.0% 27.8%
5033222 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.70 46.0 4.00e-01 88.4% 44.8%
4463837 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.69 46.0 3.99e-01 88.4% 44.8%
5061180 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.69 46.0 4.08e-01 88.4% 49.5%
3816322 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.69 49.0 3.11e-01 75.4% 90.1%
3992780 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.68 48.0 3.14e-01 72.5% 92.8%
3816742 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.68 49.0 3.15e-01 76.8% 93.5%
5064802 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 44.0 4.01e-01 87.0% 51.1%
5038830 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.67 44.0 3.82e-01 82.6% 46.0%
4968405 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.67 46.0 3.91e-01 91.3% 44.5%
4517523 375.1.1.26 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Rpr2 0.65 44.0 3.91e-01 87.0% 49.0%
4011464 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 47.0 2.95e-01 81.2% 90.7%
3783345 5.1.4.21 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Pep3_Vps18 0.60 46.0 2.99e-01 81.2% 89.8%
4428913 5.1.4.26 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Reg_prop 0.57 46.0 2.92e-01 87.0% 96.6%
3655121 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.56 50.0 3.03e-01 98.6% 92.8%
3754136 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.56 48.0 3.06e-01 94.2% 100.0%
3193833 298.1.1.8 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C 0.56 49.0 3.16e-01 98.6% 81.1%
5000881 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.56 46.0 3.73e-01 98.6% 81.9%
3890969 298.1.1.8 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C 0.55 49.0 3.28e-01 98.6% 88.5%
3697914 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.55 48.0 3.12e-01 98.6% 87.0%
None — 0.55 49.0 3.26e-01 98.6% 86.3%
3818615 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.55 46.0 2.98e-01 94.2% 87.3%
4466482 5.1.4.302 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EML 0.54 47.0 2.92e-01 94.2% 96.3%
3448051 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 44.0 3.12e-01 95.7% 83.7%
3706025 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 45.0 2.85e-01 92.8% 96.4%
3228567 2484.1.1.162 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › F-box 0.53 47.0 3.73e-01 98.6% 51.4%
3786078 109.4.1.1764 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF28917 0.53 44.0 2.74e-01 100.0% 24.8%
3821607 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.52 44.0 2.91e-01 100.0% 85.5%
3601275 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 39.0 2.47e-01 82.6% 34.6%
3936023 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 41.0 2.62e-01 84.1% 19.0%
3807893 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.52 44.0 2.85e-01 94.2% 90.6%
3823899 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.51 36.0 2.49e-01 75.4% 26.3%
3596891 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 38.0 2.49e-01 82.6% 26.5%
3801884 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.51 43.0 2.81e-01 95.7% 85.6%
3593635 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 44.0 3.80e-01 97.1% 82.7%
3421076 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.50 43.0 2.85e-01 97.1% 93.1%
3660454 5.1.5.96 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_3 0.50 38.0 2.49e-01 81.2% 91.2%
3834402 5.1.4.550 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_FKB95 0.50 44.0 2.89e-01 100.0% 81.4%
3710514 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 39.0 2.81e-01 92.8% 42.3%