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OL436246.1__UGL60846.1__X__00192
Bact-VirOL436246.1__UGL60846.1__X__00192
Identity
- Accession:
- OL436246 ↗
- Kingdom:
- phage
Quality
73.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Herelleviridae›
Silviavirus›
Staphylococcus_phage_vB_SauM-HM01
TaxID: 2894347
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-128
D2
high
residues 177-231
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3wx7A02 | 2.10.10.90 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › | 0.84 | 68.0 | 5.58e-01 | 98.2% | 50.5% |
| 1wvvB01 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.83 | 64.0 | 6.74e-01 | 100.0% | 93.8% |
| 1goiB03 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.83 | 63.0 | 6.55e-01 | 100.0% | 88.2% |
| 2rtsA00 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.81 | 64.0 | 5.76e-01 | 100.0% | 63.0% |
| 1ed7A00 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.81 | 62.0 | 6.78e-01 | 94.5% | 100.0% |
| 4cp6A00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.72 | 45.0 | 2.63e-01 | 83.6% | 8.6% |
| 2pliA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.68 | 47.0 | 4.09e-01 | 94.5% | 47.6% |
| 1aiwA00 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.68 | 61.0 | 5.83e-01 | 100.0% | 87.1% |
| 1yueA02 | 2.10.10.40 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › | 0.68 | 59.0 | 5.77e-01 | 98.2% | 95.1% |
| 4m1xD00 | 3.30.1360.240 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.66 | 47.0 | 4.30e-01 | 74.5% | 95.8% |
| 2o3gA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.63 | 45.0 | 4.03e-01 | 96.4% | 53.9% |
| 3d4rB02 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.63 | 50.0 | 4.71e-01 | 87.3% | 82.4% |
| 2p4pA00 | 3.30.465.10 | Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › | 0.63 | 43.0 | 3.78e-01 | 94.5% | 47.6% |
| 1u04A04 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.59 | 38.0 | 2.57e-01 | 90.9% | 16.5% |
| 4lxqB00 | 3.40.50.12230 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 47.0 | 3.13e-01 | 98.2% | 26.6% |
| 5tw4A02 | 2.30.140.20 | Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Penicillin-binding protein 4, C-terminal domain | 0.55 | 41.0 | 3.93e-01 | 85.5% | 94.2% |
| 3rn5A02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.55 | 46.0 | 3.92e-01 | 96.4% | 92.4% |
| 5zg8A01 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.54 | 45.0 | 3.78e-01 | 98.2% | 90.2% |
| 1fbnA01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 41.0 | 4.27e-01 | 92.7% | 92.2% |
| 1b9mA03 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.52 | 35.0 | 3.33e-01 | 72.7% | 64.8% |
| 1gutA00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.52 | 35.0 | 3.37e-01 | 72.7% | 70.1% |
| 4l5rC02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.51 | 43.0 | 3.73e-01 | 96.4% | 95.5% |
| 1fr3A00 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.50 | 34.0 | 3.27e-01 | 72.7% | 70.1% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5026481 | 64.3.1.3 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12_2 | 0.85 | 64.0 | 6.70e-01 | 100.0% | 88.0% |
| 1322863 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.84 | 66.0 | 7.19e-01 | 94.5% | 100.0% |
| 4110715 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.84 | 67.0 | 6.54e-01 | 96.4% | 79.7% |
| 3972100 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.83 | 67.0 | 6.27e-01 | 100.0% | 72.3% |
| 2389402 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.82 | 63.0 | 6.40e-01 | 100.0% | 83.3% |
| 1322862 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.82 | 65.0 | 6.93e-01 | 96.4% | 97.9% |
| 1291025 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.81 | 64.0 | 5.76e-01 | 100.0% | 63.0% |
| 3999193 | 391.1.1.7 ↗ | few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module › Fn1_2 | 0.80 | 46.0 | 4.30e-01 | 94.5% | 47.1% |
| 4233290 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.77 | 61.0 | 6.36e-01 | 100.0% | 96.0% |
| 4009007 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.77 | 61.0 | 6.33e-01 | 98.2% | 94.0% |
| 1694867 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.76 | 63.0 | 6.48e-01 | 98.2% | 94.3% |
| 3971347 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.76 | 66.0 | 6.53e-01 | 98.2% | 89.7% |
| 4307941 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.74 | 66.0 | 6.51e-01 | 98.2% | 98.3% |
| 3976685 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.72 | 63.0 | 6.37e-01 | 100.0% | 98.1% |
| 4009008 | 64.3.1.1 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12 | 0.72 | 64.0 | 6.43e-01 | 96.4% | 96.4% |
| 4009012 | 64.3.1.0 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain | 0.72 | 60.0 | 5.72e-01 | 100.0% | 79.7% |
| 3981632 | 70.4.1.9 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 | 0.72 | 47.0 | 5.24e-01 | 90.9% | 92.5% |
| 8553 | 64.3.1.3 ↗ | beta meanders › WW domain-like › Carbohydrate binding domain › Carbohydrate binding domain › CBM_5_12_2 | 0.68 | 61.0 | 5.83e-01 | 100.0% | 87.1% |
| 3942241 | 325.1.7.22 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › BSH_CusB | 0.65 | 52.0 | 4.83e-01 | 87.3% | 75.7% |
| 3964485 | 325.1.7.1 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif › Biotin_lipoyl | 0.65 | 52.0 | 4.81e-01 | 87.3% | 75.7% |
| 4131964 | 3887.1.1.6 ↗ | a+b two layers › Yeast killer toxin-like › Yeast killer toxin-like › Yeast killer toxin-like › MU117 | 0.58 | 47.0 | 4.09e-01 | 100.0% | 77.3% |
| 2761575 | 51.1.1.2 ↗ | beta sandwiches › Penicillin-binding protein associated domain › Penicillin-binding protein associated domain › Penicillin-binding protein associated domain › DUF1958 | 0.55 | 41.0 | 3.92e-01 | 85.5% | 94.2% |
| 5012905 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 40.0 | 3.43e-01 | 78.2% | 85.6% |
| 4938162 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 41.0 | 3.51e-01 | 81.8% | 87.8% |
| 1501288 | 3943.1.1.3 ↗ | beta sandwiches › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › Flagellar hook-associated protein 1 beta-sandwich domains › flgK_1st_1 | 0.54 | 39.0 | 3.50e-01 | 80.0% | 88.4% |
| 5018537 | 5090.1.1.0 ↗ | beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains | 0.54 | 41.0 | 3.45e-01 | 85.5% | 91.0% |
| 3840290 | 2.1.1.22 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › HIN | 0.53 | 44.0 | 3.61e-01 | 92.7% | 83.8% |
| 4994295 | 2.4.1.2 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 | 0.52 | 39.0 | 3.11e-01 | 85.5% | 93.8% |
| 3638672 | 11.10.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like | 0.52 | 39.0 | 2.91e-01 | 81.8% | 82.6% |
D3
medium
residues 134-173
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1wvvB01 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.65 | 45.0 | 4.29e-01 | 97.5% | 60.4% |
| 1goiB03 | 2.10.10.20 | Mainly Beta › Ribbon › Seminal Fluid Protein PDC-109 (Domain B) › Carbohydrate-binding module superfamily 5/12 | 0.65 | 44.0 | 4.18e-01 | 100.0% | 56.9% |
| 3gm8A05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 40.0 | 3.12e-01 | 95.0% | 74.5% |
| 2wpgA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.51 | 38.0 | 3.41e-01 | 97.5% | 82.7% |