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OL473597.1__UNH61167.1__SSZBM1_50__00050
Bact-VirOL473597.1__UNH61167.1__SSZBM1_50__00050
Identity
- Accession:
- OL473597 ↗
- Kingdom:
- phage
Quality
92.3
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Kyanoviridae›
Shenzhenivirus›
Synechococcus_phage_S-SZBM1
TaxID: 2926475
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 22-149_272-291
Domain cluster:
rep: MW584195.1__QSM04178.1__PROPHIGD51-2_40__00040__D376-428_443-519_647-661
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF12810.14 best | ALK_LTK_GRD | 30.0 | 7.50e-07 | 66.9% | 28.0% |
CATH (24)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3n40P04 | 2.60.40.2400 | Mainly Beta › Sandwich › Immunoglobulin-like › Alphavirus E2 glycoprotein, domain C | 0.72 | 32.0 | 4.48e-01 | 82.4% | 84.9% |
| 2xskA00 | 2.60.40.2420 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.65 | 37.0 | 4.54e-01 | 100.0% | 87.4% |
| 2q1mA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.59 | 43.0 | 4.84e-01 | 100.0% | 96.6% |
| 4oumA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.58 | 47.0 | 5.00e-01 | 100.0% | 95.5% |
| 1o91A00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.57 | 46.0 | 4.93e-01 | 100.0% | 95.4% |
| 1s3rA04 | 2.60.40.1430 | Mainly Beta › Sandwich › Immunoglobulin-like › Perfringolysin, domain 4 | 0.56 | 31.0 | 3.51e-01 | 83.1% | 68.5% |
| 1rj8A00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.56 | 48.0 | 4.94e-01 | 100.0% | 95.7% |
| 1tnrA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 50.0 | 5.10e-01 | 100.0% | 98.6% |
| 4msvA01 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 48.0 | 4.97e-01 | 100.0% | 99.3% |
| 2n59A00 | 2.60.40.2420 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 32.0 | 3.75e-01 | 100.0% | 82.2% |
| 4gioA00 | 2.60.40.3230 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 35.0 | 4.23e-01 | 98.6% | 100.0% |
| 4llfD02 | 2.60.40.4030 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 39.0 | 4.28e-01 | 100.0% | 90.0% |
| 1x5zA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 28.0 | 3.28e-01 | 83.1% | 67.6% |
| 4i3gA03 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.55 | 37.0 | 4.29e-01 | 100.0% | 96.3% |
| 2qqkA02 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.54 | 35.0 | 3.98e-01 | 100.0% | 85.2% |
| 4hsaF02 | 2.60.40.2150 | Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 2 | 0.54 | 33.0 | 3.82e-01 | 100.0% | 84.8% |
| 1opoA02 | 2.60.40.1780 | Mainly Beta › Sandwich › Immunoglobulin-like › Carmovirus coat protein | 0.54 | 36.0 | 4.19e-01 | 100.0% | 97.1% |
| 1s55A00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 50.0 | 4.95e-01 | 100.0% | 95.5% |
| 6mkbA00 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.54 | 50.0 | 4.91e-01 | 100.0% | 95.0% |
| 4kkpA02 | 2.60.40.3880 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 35.0 | 3.85e-01 | 100.0% | 85.8% |
| 1yq5A00 | 2.60.120.670 | Mainly Beta › Sandwich › Jelly Rolls › Minor capsid protein. | 0.52 | 45.0 | 4.64e-01 | 100.0% | 97.2% |
| 1g0dA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 33.0 | 3.79e-01 | 100.0% | 87.3% |
| 2re9A01 | 2.60.120.40 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 47.0 | 4.66e-01 | 100.0% | 99.4% |
| 3kq4B03 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.51 | 35.0 | 3.94e-01 | 100.0% | 93.8% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3602859 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.57 | 33.0 | 4.08e-01 | 100.0% | 94.4% |
| 3535343 | 10.3.1.1 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF | 0.56 | 49.0 | 4.88e-01 | 100.0% | 90.7% |
| 5010503 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 32.0 | 3.77e-01 | 81.8% | 85.3% |
| 4965183 | 11.1.1.1432 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PF26259 | 0.55 | 30.0 | 3.65e-01 | 100.0% | 87.1% |
| 2126854 | 10.42.1.0 ↗ | beta sandwiches › jelly-roll › ssRNA positive-strand viruses coat protein P (projecting) domain › ssRNA positive-strand viruses coat protein P (projecting) domain | 0.55 | 39.0 | 4.30e-01 | 100.0% | 90.8% |
| 5004444 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 32.0 | 3.70e-01 | 100.0% | 82.0% |
| 1723239 | 10.42.1.1 ↗ | beta sandwiches › jelly-roll › ssRNA positive-strand viruses coat protein P (projecting) domain › ssRNA positive-strand viruses coat protein P (projecting) domain › Carmo_coat_C | 0.54 | 36.0 | 4.21e-01 | 100.0% | 98.0% |
| 3908007 | 10.3.1.1 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF | 0.54 | 49.0 | 4.94e-01 | 100.0% | 96.7% |
| 151167 | 10.3.1.1 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF | 0.54 | 50.0 | 4.95e-01 | 100.0% | 95.5% |
| 5030081 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 31.0 | 3.72e-01 | 100.0% | 88.4% |
| 3256893 | 11.1.1.542 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Gryzun-like | 0.53 | 34.0 | 3.82e-01 | 100.0% | 84.5% |
| 4059278 | 11.1.1.608 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Por_Secre_tail | 0.53 | 27.0 | 3.39e-01 | 96.6% | 85.9% |
| 3933995 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 27.0 | 3.34e-01 | 100.0% | 81.2% |
| 3412819 | 10.3.1.1 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF | 0.52 | 46.0 | 4.68e-01 | 100.0% | 94.5% |
| 3897855 | 10.3.1.1 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like › TNF | 0.52 | 49.0 | 4.62e-01 | 100.0% | 93.1% |
| 5083245 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 35.0 | 3.97e-01 | 83.1% | 90.9% |
| 4456175 | 10.2.1.0 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) | 0.52 | 37.0 | 3.28e-01 | 100.0% | 49.5% |
| 2527387 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.51 | 28.0 | 3.33e-01 | 100.0% | 78.9% |
| 3211155 | 10.4.1.9 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_2 | 0.51 | 34.0 | 3.78e-01 | 100.0% | 86.1% |
| 3280259 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 29.0 | 3.63e-01 | 99.3% | 97.6% |
| 3688941 | 11.1.1.643 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig-like_POM152 | 0.50 | 30.0 | 3.57e-01 | 100.0% | 90.5% |
| 4217288 | 10.3.1.0 ↗ | beta sandwiches › jelly-roll › TNF-like › TNF-like | 0.50 | 45.0 | 4.20e-01 | 96.6% | 100.0% |
D2
medium
residues 150-271
Domain cluster:
representative