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OL505078.1__UGV23836.1__X__00014

Bact-Vir

OL505078.1__UGV23836.1__X__00014

Identity

Accession:
OL505078 ↗
Kingdom:
phage

Quality

80.1 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 27-107
PDB
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.67 43.0 5.03e-01 100.0% 100.0%
3ptaA03 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.57 40.0 3.19e-01 74.1% 39.5%
1zghA01 3.40.50.170 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Formyl transferase, N-terminal domain 0.56 36.0 2.92e-01 96.3% 32.1%
1d5tA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 46.0 3.64e-01 92.6% 77.7%
3iwaA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 47.0 3.41e-01 97.5% 53.2%
6c1zA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 47.0 4.01e-01 100.0% 90.6%
3gf8A02 2.60.40.2090 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 41.0 3.60e-01 82.7% 96.8%
3d8dA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 41.0 3.50e-01 90.1% 97.8%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
139681 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.65 51.0 5.11e-01 100.0% 82.4%
3968457 101.15.1.2 alpha arrays › HTH › LysM domain › LysM domain › OapA 0.56 40.0 3.95e-01 75.3% 95.3%
4990182 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.54 39.0 4.06e-01 79.0% 96.0%
4952432 243.6.1.1 a+b two layers › Cystatin-like › Pre-PUA domain › Pre-PUA domain › DUF1947 0.52 38.0 3.97e-01 79.0% 97.1%
3835887 264.1.1.10 beta barrels › LigT-like › LigT-related › LigT-related › tRNA_lig_CPD 0.52 44.0 3.71e-01 100.0% 97.3%
D2 medium residues 111-172
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1svdM00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.79 59.0 4.90e-01 80.6% 58.3%
2yq1C00 3.30.70.390 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Epstein Barr virus nuclear antigen-1, DNA-binding domain 0.78 57.0 4.41e-01 77.4% 69.5%
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.74 55.0 4.99e-01 79.0% 98.8%
3gm8A04 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.72 49.0 4.55e-01 79.0% 56.4%
3glkA03 3.30.1490.20 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain 0.69 47.0 4.78e-01 74.2% 74.6%
2jveA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.69 48.0 4.63e-01 74.2% 91.5%
2iiiA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.68 50.0 4.05e-01 79.0% 94.2%
3kg0A00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 49.0 4.24e-01 77.4% 100.0%
2w1nA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 51.0 4.62e-01 83.9% 62.2%
3egrA00 3.10.20.520 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phenylacetic acid degradation B 0.66 50.0 4.98e-01 80.6% 95.2%
3skvA01 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.66 50.0 3.77e-01 82.3% 54.5%
3pddA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 52.0 4.42e-01 85.5% 77.2%
1iamA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.66 51.0 4.32e-01 83.9% 82.4%
3ce8A00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 48.0 4.35e-01 80.6% 98.9%
1zpwX00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 49.0 4.56e-01 85.5% 93.9%
3mgjA00 3.30.70.2690 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › LOR/SDH bifunctional enzyme, conserved domain 0.65 44.0 3.89e-01 72.6% 89.6%
5tipA01 2.70.9.10 Mainly Beta › Distorted Sandwich › Adenovirus Type 2 Hexon; domain 4 › Adenovirus Type 2 Hexon, domain 4 0.64 48.0 3.41e-01 80.6% 69.1%
1o91A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.64 48.0 3.79e-01 82.3% 74.8%
1zxqA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 49.0 4.10e-01 83.9% 82.2%
1nxiA00 3.30.70.970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RraB-like 0.63 47.0 3.81e-01 83.9% 72.0%
4ggmX02 3.40.140.80 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › LpxI C-terminal catalytic domain 0.63 47.0 3.65e-01 83.9% 60.0%
1vcaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 47.0 3.95e-01 82.3% 80.0%
5is2A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 47.0 4.20e-01 83.9% 98.9%
2q1mA00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.62 45.0 3.70e-01 79.0% 41.4%
2mq8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.62 42.0 3.55e-01 72.6% 90.2%
4gi3C00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.62 38.0 4.00e-01 75.8% 68.4%
2y7qA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.61 44.0 3.89e-01 75.8% 52.8%
1u8sA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 41.0 3.84e-01 72.6% 100.0%
3r8yA01 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.60 42.0 4.14e-01 74.2% 90.9%
1edqA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 43.0 3.71e-01 85.5% 46.7%
2rilA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 43.0 3.80e-01 79.0% 98.9%
4eskC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 45.0 3.91e-01 83.9% 56.1%
5xbfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 44.0 3.99e-01 83.9% 62.1%
2vvfA01 2.60.120.730 Mainly Beta › Sandwich › Jelly Rolls › 0.58 43.0 3.38e-01 80.6% 75.9%
4w8jA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.58 43.0 3.20e-01 79.0% 55.8%
1hx6A02 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.58 42.0 3.33e-01 80.6% 88.7%
3rgzA02 3.30.1490.310 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.57 43.0 4.35e-01 80.6% 95.1%
7pjjA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 44.0 3.47e-01 83.9% 84.5%
2d9oA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.56 40.0 3.55e-01 79.0% 86.0%
2aqjA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 44.0 2.68e-01 91.9% 45.5%
2m88A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 39.0 3.54e-01 74.2% 95.3%
3ks7A02 2.60.120.230 Mainly Beta › Sandwich › Jelly Rolls › 0.55 42.0 3.09e-01 82.3% 60.9%
1xo8A00 2.60.40.1820 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 41.0 3.22e-01 85.5% 74.2%
2j8bA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.53 38.0 3.57e-01 77.4% 88.5%
2wadA02 3.90.1310.10 Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) 0.53 40.0 3.25e-01 91.9% 48.6%
3ju8A01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.52 42.0 2.82e-01 93.5% 84.0%
1kbaA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.51 35.0 3.49e-01 72.6% 72.7%
4qawH03 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.50 36.0 2.98e-01 80.6% 62.7%
1rylA00 3.40.1760.10 Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical protein yfbM fold › YfbM-like super family 0.50 38.0 2.95e-01 85.5% 94.9%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4401965 304.1.1.0 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain 0.86 62.0 4.66e-01 75.8% 96.4%
5053381 304.1.1.1 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.84 61.0 4.48e-01 75.8% 96.0%
4186857 4012.1.1.0 a+b two layers › SSHS domain › SSHS domain in type II DNA topoisomerase › SSHS domain in type II DNA topoisomerase 0.82 52.0 6.27e-01 71.0% 100.0%
4971624 304.1.1.1 a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.79 58.0 4.49e-01 77.4% 96.2%
4105022 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.74 50.0 4.45e-01 71.0% 85.6%
4945049 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.73 52.0 4.48e-01 74.2% 85.3%
5033448 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.72 50.0 4.48e-01 74.2% 84.4%
4394754 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.72 49.0 4.33e-01 71.0% 82.2%
3587356 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.71 49.0 4.41e-01 74.2% 86.7%
4399086 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.70 47.0 4.31e-01 71.0% 88.2%
3973305 304.4.1.20 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg2 0.70 54.0 4.47e-01 85.5% 80.7%
4534213 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.70 49.0 4.42e-01 74.2% 89.4%
4345964 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.70 50.0 4.39e-01 77.4% 83.2%
4062392 304.5.1.7 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.68 49.0 4.24e-01 77.4% 78.0%
3176986 221.1.1.6 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA 0.68 57.0 5.19e-01 95.2% 71.8%
4311079 304.4.1.20 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › AsnC_trans_reg2 0.67 50.0 4.38e-01 82.3% 87.9%
169110 382.1.1.0 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like 0.67 48.0 4.61e-01 75.8% 91.4%
5035636 304.26.1.1 a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.67 49.0 4.27e-01 80.6% 100.0%
4124102 2006.1.3.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.65 49.0 3.36e-01 83.9% 35.8%
5005349 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.65 47.0 2.85e-01 80.6% 11.2%
4028876 6108.1.1.0 alpha bundles › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins 0.65 47.0 2.71e-01 79.0% 8.9%
3572286 11.1.1.178 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.63 46.0 4.21e-01 82.3% 57.6%
3550277 10.3.1.0 beta sandwiches › jelly-roll › TNF-like › TNF-like 0.62 46.0 3.71e-01 79.0% 40.8%
4008166 3115.1.1.10 a+b two layers › GP2-like › RplX-like › RplX-like › PF27430 0.62 44.0 3.94e-01 79.0% 70.5%
3624276 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.61 42.0 4.26e-01 71.0% 98.3%
3477040 7585.1.1.1 a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Sec1 0.61 42.0 2.90e-01 71.0% 91.9%
3629429 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.61 43.0 4.09e-01 75.8% 68.0%
3795654 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.60 44.0 4.09e-01 79.0% 78.8%
3454894 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.60 41.0 3.04e-01 72.6% 57.6%
3237024 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 43.0 3.57e-01 87.1% 41.7%
3635528 264.1.1.7 beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS 0.59 41.0 2.84e-01 72.6% 87.2%
3479367 822.1.1.1 a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF 0.59 42.0 4.18e-01 75.8% 76.6%
184942 10.2.1.56 beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › P2_N 0.58 43.0 3.38e-01 80.6% 75.9%
3400462 379.1.1.0 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors 0.57 40.0 4.16e-01 79.0% 81.0%
3927100 10.4.1.0 beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.57 43.0 3.51e-01 82.3% 67.5%
3275987 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.55 44.0 4.03e-01 98.4% 97.9%
3788518 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 41.0 3.48e-01 85.5% 48.6%
3915794 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 39.0 3.35e-01 82.3% 49.1%
3660081 10.32.1.37 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › Malectin 0.53 39.0 2.90e-01 82.3% 37.2%
3988217 241.12.1.0 a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like 0.52 39.0 2.88e-01 87.1% 63.5%