←Back to structures

OL505084.1__UIE13765.1__X__00060

Bact-Vir

OL505084.1__UIE13765.1__X__00060

Identity

Accession:
OL505084 ↗
Kingdom:
phage

Quality

70.6 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Efquatrovirus› Enterococcus_phage_EFap02

TaxID: 2900338

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 15-63
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF22083.3 best I-HmuI_NUMOD-like 83.0 1.20e-23 95.9% 95.7%
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1u3eM02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.96 90.0 7.93e-01 100.0% 73.5%
1r8eA02 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.77 48.0 4.18e-01 77.6% 42.5%
3hh0A01 1.10.1660.10 Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › 0.76 48.0 4.17e-01 77.6% 43.1%
1r69A00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.66 58.0 5.28e-01 95.9% 85.7%
4b8vA02 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.65 50.0 4.32e-01 81.6% 69.9%
1uxdA00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.63 44.0 4.19e-01 73.5% 83.1%
1mwrA03 3.30.1390.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein L30; Chain: A, › Penicillin-binding protein 2a; domain 3 0.63 47.0 4.17e-01 79.6% 71.4%
3prbA01 3.10.50.40 Alpha Beta › Roll › Chitinase A; domain 3 › 0.62 51.0 4.16e-01 100.0% 94.3%
2mtzA01 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.62 45.0 4.55e-01 79.6% 92.0%
3oouA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 52.0 5.04e-01 93.9% 87.3%
2ltuA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.60 47.0 4.36e-01 100.0% 66.1%
5c8qB02 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.58 46.0 4.75e-01 85.7% 100.0%
3pfiA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.58 48.0 4.23e-01 93.9% 75.3%
4dq5B00 1.10.530.50 Mainly Alpha › Orthogonal Bundle › Lysozyme › Peptidase U40 0.57 40.0 2.85e-01 75.5% 28.1%
3l2pA01 1.10.3260.10 Mainly Alpha › Orthogonal Bundle › DNA ligase i, domain 1 › DNA ligase, ATP-dependent, N-terminal domain 0.57 40.0 2.71e-01 73.5% 49.0%
3nuhB02 3.30.300.370 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › 0.55 48.0 3.63e-01 100.0% 94.2%
3h5tA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 47.0 4.80e-01 100.0% 100.0%
2nydA02 2.20.28.300 Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › 0.55 35.0 3.68e-01 100.0% 78.0%
4tv7D01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 46.0 3.85e-01 93.9% 65.9%
2dymC01 3.10.20.620 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 41.0 3.43e-01 89.8% 87.1%
3cjrB01 3.30.1550.10 Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain 0.53 41.0 3.76e-01 89.8% 97.1%
3c26A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 42.0 2.77e-01 95.9% 19.5%
5umbA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.51 36.0 2.53e-01 77.6% 94.5%
7apeB01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.50 40.0 2.88e-01 100.0% 100.0%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2876 101.1.14.2 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › I-HmuI_NUMOD-like 0.96 90.0 7.88e-01 100.0% 72.5%
4384880 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.86 78.0 6.42e-01 100.0% 61.2%
3058113 101.1.14.0 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases 0.85 73.0 7.19e-01 100.0% 90.4%
4414927 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.82 74.0 6.57e-01 100.0% 73.9%
4155056 101.1.14.0 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases 0.79 69.0 5.89e-01 100.0% 65.0%
3171408 101.1.14.3 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases › NUMOD1 0.78 67.0 6.66e-01 95.9% 98.0%
3587703 101.1.14.0 ↗ alpha arrays › HTH › HTH › DNA-binding domain of intron-encoded endonucleases 0.77 68.0 6.76e-01 98.0% 96.0%
3281073 101.1.9.17 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR_1 0.75 47.0 3.61e-01 77.6% 29.5%
3947025 235.1.1.0 ↗ a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like 0.69 50.0 3.49e-01 79.6% 40.5%
3320955 101.15.1.5 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.66 50.0 4.56e-01 81.6% 73.8%
3720958 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.66 50.0 5.03e-01 81.6% 96.0%
4249176 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.64 47.0 4.45e-01 79.6% 80.0%
3655335 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.64 48.0 3.30e-01 81.6% 28.5%
4968600 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.63 53.0 4.21e-01 93.9% 49.0%
3413357 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.63 49.0 4.33e-01 83.7% 78.6%
3452845 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.63 47.0 4.59e-01 81.6% 85.5%
3903953 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.63 48.0 4.85e-01 83.7% 92.0%
3985839 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.63 46.0 4.11e-01 79.6% 65.7%
3967226 101.1.4.0 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.62 56.0 4.93e-01 100.0% 88.6%
3877814 4357.1.1.5 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_4 0.61 51.0 4.76e-01 100.0% 93.8%
3186054 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.60 47.0 4.72e-01 85.7% 96.0%
3898121 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.60 46.0 4.44e-01 83.7% 85.5%
1030936 308.2.1.0 ↗ a+b two layers › ClpS-like › Penicillin binding protein ClpS-like domain › Penicillin binding protein ClpS-like domain 0.60 47.0 4.16e-01 85.7% 94.4%
3838194 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.57 46.0 4.79e-01 89.8% 95.6%
4317542 297.1.1.0 ↗ a+b complex topology › YrdC/RibB › YrdC/RibB › YrdC/RibB 0.56 41.0 2.97e-01 87.8% 37.2%
5027754 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.56 48.0 4.79e-01 93.9% 96.0%
1149482 101.1.4.2 ↗ alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › LacI 0.55 47.0 4.80e-01 100.0% 100.0%
4460243 101.1.9.8 ↗ alpha arrays › HTH › HTH › Putative DNA-binding domain › IF2_N 0.55 46.0 4.42e-01 89.8% 98.2%
4889247 220.3.1.3 ↗ beta barrels › PH domain-like › first barrel domain in viral glycoproteins › first barrel domain in viral glycoproteins › Glycoprot_B_PH1 0.52 42.0 3.35e-01 100.0% 56.6%