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OL539468.1__UGO54285.1__HAYMO_303__00303
Bact-VirOL539468.1__UGO54285.1__HAYMO_303__00303
Identity
- Accession:
- OL539468 ↗
- Kingdom:
- phage
Quality
69.1
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Chimalliviridae›
Moabitevirus›
Serratia_phage_vB_SmaM_Haymo
TaxID: 2902685
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-46
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1a1xA00 | 2.40.15.10 | Mainly Beta › Beta Barrel › Proto-oncogene - Oncogene Product P14tcl1 › TCL1/MTCP1 | 0.69 | 50.0 | 3.84e-01 | 79.5% | 79.2% |
| 3lxrF00 | 1.10.4120.20 | Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › | 0.69 | 47.0 | 3.16e-01 | 72.7% | 65.7% |
| 3pubA02 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.67 | 54.0 | 3.80e-01 | 97.7% | 82.6% |
| 3oe3C00 | 2.40.128.200 | Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor | 0.66 | 52.0 | 4.25e-01 | 90.9% | 58.0% |
| 4hdoA03 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.64 | 49.0 | 3.96e-01 | 88.6% | 68.5% |
| 6yfiB01 | 3.30.380.10 | Alpha Beta › 2-Layer Sandwich › MS2 Viral Coat Protein › MS2 Viral Coat Protein | 0.63 | 50.0 | 3.72e-01 | 97.7% | 48.1% |
| 3kl9A02 | 2.40.30.40 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 | 0.62 | 47.0 | 3.96e-01 | 100.0% | 50.0% |
| 3rv0B03 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.61 | 47.0 | 4.09e-01 | 95.5% | 82.3% |
| 2sliA03 | 2.40.220.10 | Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 | 0.59 | 46.0 | 3.62e-01 | 88.6% | 80.0% |
| 2lg1A02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.58 | 45.0 | 3.44e-01 | 93.2% | 33.9% |
| 5wcmA00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.58 | 43.0 | 2.72e-01 | 84.1% | 31.2% |
| 3sluA02 | 3.10.450.350 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 39.0 | 2.87e-01 | 84.1% | 23.4% |
| 4tllC01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.57 | 40.0 | 2.96e-01 | 72.7% | 39.5% |
| 3h8zA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 40.0 | 3.98e-01 | 81.8% | 77.1% |
| 2jneA00 | 2.10.290.10 | Mainly Beta › Ribbon › Rubredoxin-like › YfgJ-like | 0.56 | 41.0 | 3.69e-01 | 86.4% | 53.5% |
| 3tfmA01 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.55 | 39.0 | 3.18e-01 | 79.5% | 68.7% |
| 3w5jA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 44.0 | 2.92e-01 | 93.2% | 27.8% |
| 6fndA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.55 | 38.0 | 2.58e-01 | 81.8% | 17.7% |
| 6gpkA02 | 3.90.25.10 | Alpha Beta › Alpha-Beta Complex › UDP-galactose 4-epimerase; domain 1 › UDP-galactose 4-epimerase, domain 1 | 0.55 | 43.0 | 3.29e-01 | 90.9% | 54.1% |
| 2x10A01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 42.0 | 2.90e-01 | 88.6% | 90.1% |
| 3licA01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 37.0 | 2.51e-01 | 72.7% | 50.6% |
| 7ob9B02 | 3.90.1800.10 | Alpha Beta › Alpha-Beta Complex › DCoH-like › RNA polymerase alpha subunit dimerisation domain | 0.54 | 41.0 | 3.21e-01 | 86.4% | 37.3% |
| 2kr7A02 | 2.40.10.330 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.53 | 36.0 | 3.35e-01 | 97.7% | 52.6% |
| 5vqfD01 | 2.60.120.970 | Mainly Beta › Sandwich › Jelly Rolls › | 0.53 | 42.0 | 2.68e-01 | 90.9% | 62.8% |
| 5i92F01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.52 | 40.0 | 2.83e-01 | 97.7% | 68.8% |
ECOD (37)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4009814 | 252.2.1.5 ↗ | a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 | 0.70 | 48.0 | 4.30e-01 | 72.7% | 86.2% |
| 3464207 | 377.2.1.4 ↗ | few secondary structure elements › Glucocorticoid receptor-like › C-terminal, Zn-finger domain of MutM-like DNA repair proteins › C-terminal, Zn-finger domain of MutM-like DNA repair proteins › Fpg-like_C | 0.69 | 39.0 | 4.10e-01 | 70.5% | 57.5% |
| 4181687 | 4.1.1.7 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 | 0.69 | 50.0 | 3.84e-01 | 79.5% | 98.1% |
| 3080538 | 4.1.1.7 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 | 0.67 | 47.0 | 3.63e-01 | 75.0% | 98.0% |
| 4437258 | 4.1.1.178 ↗ | beta barrels › SH3 › SH3 › SH3 › ribosomal_L24 | 0.66 | 48.0 | 3.59e-01 | 79.5% | 98.3% |
| 3254253 | 4.1.1.7 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW,ribosomal_L24 | 0.65 | 48.0 | 3.33e-01 | 81.8% | 67.1% |
| 4572131 | 267.1.1.3 ↗ | a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase | 0.64 | 50.0 | 3.13e-01 | 88.6% | 27.2% |
| 4281449 | 2.4.1.3 ↗ | beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2,OB_MalK | 0.63 | 49.0 | 3.52e-01 | 86.4% | 85.2% |
| 4989647 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.62 | 43.0 | 4.03e-01 | 79.5% | 58.2% |
| 4027120 | 1.1.1.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease | 0.62 | 52.0 | 3.83e-01 | 100.0% | 80.8% |
| 4600978 | 377.2.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › C-terminal, Zn-finger domain of MutM-like DNA repair proteins › C-terminal, Zn-finger domain of MutM-like DNA repair proteins | 0.62 | 41.0 | 4.28e-01 | 70.5% | 78.9% |
| 3797569 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.61 | 49.0 | 4.68e-01 | 100.0% | 100.0% |
| 4937577 | 375.1.1.53 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Nudix_N_2 | 0.60 | 41.0 | 4.33e-01 | 77.3% | 91.4% |
| 5012286 | 284.4.1.1 ↗ | a+b two layers › FKBP-like › Archaeal FKBP insertion domain › Archaeal FKBP insertion domain › FKBP26_IF | 0.58 | 39.0 | 3.63e-01 | 70.5% | 60.0% |
| 3590421 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.58 | 41.0 | 4.42e-01 | 79.5% | 94.3% |
| 4478350 | 218.1.1.2 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N | 0.58 | 43.0 | 3.26e-01 | 84.1% | 96.7% |
| 4943366 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.58 | 42.0 | 3.50e-01 | 93.2% | 42.4% |
| 3472428 | 4184.1.1.1 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › DM9 | 0.57 | 42.0 | 3.61e-01 | 84.1% | 50.0% |
| 3266485 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.57 | 44.0 | 3.19e-01 | 88.6% | 44.3% |
| 5038361 | 4294.1.1.13 ↗ | few secondary structure elements › Trm112p-like › Trm112p-like › Trm112p-like › Zn_ribbon_TFIIB | 0.57 | 41.0 | 4.13e-01 | 79.5% | 91.1% |
| 5039125 | 375.1.1.83 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-TFIIB | 0.57 | 42.0 | 3.80e-01 | 84.1% | 66.2% |
| 4992408 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.56 | 39.0 | 3.88e-01 | 75.0% | 88.9% |
| 4956223 | 2484.1.1.34 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 | 0.55 | 39.0 | 2.43e-01 | 100.0% | 11.9% |
| 3707513 | 2004.1.1.250 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd | 0.55 | 41.0 | 2.47e-01 | 84.1% | 12.7% |
| 3715939 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.54 | 39.0 | 2.65e-01 | 84.1% | 55.1% |
| 3718370 | 109.21.1.3 ↗ | alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Sec16_C | 0.54 | 40.0 | 2.37e-01 | 90.9% | 18.1% |
| 3713023 | 220.1.1.0 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like | 0.54 | 41.0 | 2.90e-01 | 88.6% | 45.0% |
| 5005252 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 39.0 | 3.93e-01 | 88.6% | 82.2% |
| 4943922 | 2005.1.1.122 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › ETF_alpha | 0.53 | 37.0 | 2.52e-01 | 81.8% | 80.0% |
| 4951495 | 375.1.1.299 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf | 0.52 | 38.0 | 3.89e-01 | 81.8% | 92.5% |
| 3287840 | 377.2.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › C-terminal, Zn-finger domain of MutM-like DNA repair proteins › C-terminal, Zn-finger domain of MutM-like DNA repair proteins › zf-FPG_IleRS | 0.52 | 35.0 | 3.56e-01 | 72.7% | 73.3% |
| 4016439 | 4086.1.1.1 ↗ | a+b two layers › AMPKBI-like › AMPKBI-like › AMPKBI-like › AMPKBI | 0.52 | 35.0 | 2.69e-01 | 100.0% | 28.6% |
| 4579024 | 375.13.1.1 ↗ | few secondary structure elements › Rubredoxin-like › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Mycobacterium tuberculosis Topoisomerase I C-terminal domain › Toprim_C_rpt | 0.51 | 39.0 | 3.74e-01 | 97.7% | 93.1% |
| 3405466 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.50 | 41.0 | 2.90e-01 | 100.0% | 27.3% |
| 3217981 | 2484.1.1.200 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH | 0.50 | 39.0 | 2.77e-01 | 95.5% | 30.0% |
| 3817530 | 5.1.3.65 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 | 0.50 | 39.0 | 2.47e-01 | 88.6% | 21.2% |
| 3502668 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.50 | 34.0 | 3.05e-01 | 70.5% | 47.7% |