←Back to structures
OL539729.2__UFZ20916.1__KCHCOFBK_00006__00006
Bact-VirOL539729.2__UFZ20916.1__KCHCOFBK_00006__00006
Identity
- Accession:
- OL539729 ↗
- Kingdom:
- phage
Quality
65.0
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Autographivirales›
Autotranscriptaviridae›
Kayfunavirus›
Salmonella_phage_PRF-SP3
TaxID: 2900272
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 40-112
Domain cluster:
representative
CATH (11)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6opmD01 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.66 | 42.0 | 2.86e-01 | 72.6% | 19.7% |
| 4n06A02 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.66 | 44.0 | 2.91e-01 | 79.5% | 18.9% |
| 1yx3A01 | 3.30.1420.10 | Alpha Beta › 2-Layer Sandwich › Dissimilatory Siroheme-sulfite Reductase; Chain: A; domain 1 › DsrC protein, N-terminal domain | 0.57 | 29.0 | 3.67e-01 | 90.4% | 85.4% |
| 1je3A01 | 3.30.110.40 | Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain | 0.55 | 35.0 | 3.50e-01 | 90.4% | 63.0% |
| 4htfA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 37.0 | 2.65e-01 | 94.5% | 21.7% |
| 7q5yB01 | 3.30.460.80 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit | 0.53 | 38.0 | 3.33e-01 | 78.1% | 77.5% |
| 4f3hA00 | 3.20.20.450 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain | 0.53 | 39.0 | 2.80e-01 | 82.2% | 44.9% |
| 3r4iA02 | 6.10.140.960 | Special › Helix non-globular › Helix Hairpins › | 0.51 | 32.0 | 3.42e-01 | 84.9% | 75.0% |
| 1ed1A00 | 1.10.150.90 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Immunodeficiency lentiviruses, gag gene matrix protein p17 | 0.51 | 39.0 | 3.42e-01 | 83.6% | 71.9% |
| 3h6eA03 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.51 | 39.0 | 2.78e-01 | 100.0% | 26.4% |
| 3gmiA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.50 | 43.0 | 3.11e-01 | 97.3% | 69.4% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4003733 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.67 | 44.0 | 2.77e-01 | 75.3% | 14.5% |
| 4046811 | 3239.1.1.1 ↗ | alpha complex topology › Cas1 › Cas1 › Cas1 › Cas_Cas1 | 0.66 | 44.0 | 2.85e-01 | 80.8% | 16.0% |
| 3344997 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.60 | 41.0 | 3.69e-01 | 98.6% | 51.0% |
| 3989563 | 223.1.1.27 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 | 0.60 | 39.0 | 2.94e-01 | 89.0% | 27.4% |
| 4312796 | 3265.1.1.0 ↗ | alpha arrays › C-terminal helical domain in tRNA modifying enzyme GidA › C-terminal helical domain in tRNA modifying enzyme GidA › C-terminal helical domain in tRNA modifying enzyme GidA | 0.58 | 44.0 | 4.72e-01 | 94.5% | 98.3% |
| 4408940 | 3265.1.1.1 ↗ | alpha arrays › C-terminal helical domain in tRNA modifying enzyme GidA › C-terminal helical domain in tRNA modifying enzyme GidA › C-terminal helical domain in tRNA modifying enzyme GidA › GIDA_C_1st | 0.58 | 44.0 | 4.44e-01 | 100.0% | 81.3% |
| 4327204 | 3265.1.1.1 ↗ | alpha arrays › C-terminal helical domain in tRNA modifying enzyme GidA › C-terminal helical domain in tRNA modifying enzyme GidA › C-terminal helical domain in tRNA modifying enzyme GidA › GIDA_C_1st | 0.58 | 43.0 | 4.42e-01 | 94.5% | 84.3% |
| 3607649 | 320.1.1.0 ↗ | a+b two layers › R3H domain-like › R3H domain › R3H domain | 0.57 | 35.0 | 3.75e-01 | 84.9% | 73.3% |
| 4987009 | 3837.1.1.1 ↗ | alpha bundles › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › Uncharacterized conserved protein Dip1984 › DUF6847 | 0.57 | 45.0 | 3.55e-01 | 84.9% | 64.7% |
| 3834882 | 2002.1.1.30 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_18 | 0.57 | 42.0 | 2.70e-01 | 79.5% | 30.2% |
| 3660528 | 109.4.1.1146 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › ARM_PUB | 0.57 | 39.0 | 2.35e-01 | 82.2% | 10.7% |
| 5009734 | 304.48.1.31 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › Cas10-Cmr2_palm2 | 0.57 | 39.0 | 2.74e-01 | 74.0% | 62.5% |
| 4679576 | 3265.1.1.1 ↗ | alpha arrays › C-terminal helical domain in tRNA modifying enzyme GidA › C-terminal helical domain in tRNA modifying enzyme GidA › C-terminal helical domain in tRNA modifying enzyme GidA › GIDA_C_1st | 0.56 | 44.0 | 4.16e-01 | 100.0% | 70.0% |
| 5027290 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.56 | 41.0 | 3.13e-01 | 80.8% | 33.9% |
| 3989572 | 223.1.1.27 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 | 0.55 | 38.0 | 3.06e-01 | 71.2% | 81.2% |
| 4995731 | 502.1.1.0 ↗ | a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain | 0.55 | 31.0 | 3.42e-01 | 74.0% | 66.7% |
| 3735991 | 109.4.1.526 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Atx10homo_assoc | 0.54 | 41.0 | 2.40e-01 | 80.8% | 20.3% |
| 5042736 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.54 | 40.0 | 2.93e-01 | 87.7% | 30.8% |
| 5051708 | 4.8.1.0 ↗ | beta barrels › SH3 › Chromo domain-like › Chromo domain-like | 0.53 | 28.0 | 3.17e-01 | 100.0% | 68.0% |
| 4959688 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.53 | 45.0 | 2.79e-01 | 100.0% | 69.0% |
| 4986643 | 2484.1.1.148 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_5 | 0.53 | 47.0 | 3.04e-01 | 100.0% | 50.1% |
| 4374689 | 601.7.1.40 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › Cas13a_C | 0.52 | 47.0 | 2.78e-01 | 100.0% | 48.0% |
| 3937966 | 109.4.1.73 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Uso1_p115_head | 0.51 | 45.0 | 2.96e-01 | 100.0% | 30.6% |
| 4983352 | 2498.2.1.0 ↗ | mixed a+b and a/b › Zincin-like › beta-N-acetylhexosaminidase-like domain › beta-N-acetylhexosaminidase-like domain | 0.50 | 42.0 | 3.19e-01 | 94.5% | 90.3% |
D2
high
residues 117-164