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OL603975.1__UGD08554.1__X__00001
Bact-VirOL603975.1__UGD08554.1__X__00001
Identity
- Accession:
- OL603975 ↗
- Kingdom:
- phage
Quality
86.9
mean pLDDT
Taxonomy
TaxID: 2832663
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 82-143
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6xgpB01 | 3.30.1930.10 | Alpha Beta › 2-Layer Sandwich › capsid protein of prophage fold › capsid protein of prophage domain | 0.96 | 91.0 | 6.82e-01 | 100.0% | 46.3% |
| 3fiwA02 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.67 | 56.0 | 4.64e-01 | 96.8% | 61.5% |
| 2qlrA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.56 | 41.0 | 2.77e-01 | 77.4% | 52.9% |
| 2f48A01 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.52 | 44.0 | 2.92e-01 | 98.4% | 53.3% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2640765 | 2485.3.1.1 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E | 0.92 | 86.0 | 5.18e-01 | 100.0% | 17.6% |
| 5041714 | 102.2.1.3 ↗ | alpha arrays › HhH/H2TH › H2TH › H2TH › NFACT_N | 0.59 | 40.0 | 3.03e-01 | 71.0% | 30.7% |
| 3970799 | 602.3.1.0 ↗ | alpha arrays › L-aspartase middle domain-like › TssK neck domain › TssK neck domain | 0.58 | 41.0 | 3.36e-01 | 75.8% | 81.7% |
| 3616572 | 109.4.1.313 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › UTP20_N | 0.54 | 45.0 | 2.42e-01 | 100.0% | 7.6% |
D2
medium
residues 1-79
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF03864.23 best | Phage_cap_E | 42.2 | 7.50e-11 | 100.0% | 22.6% |
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bqwA01 | 3.15.30.10 | Alpha Beta › Super Roll › putative capsid protein of prophage fold › putative capsid protein of prophage domain like | 0.87 | 80.0 | 5.67e-01 | 98.7% | 36.7% |
| 4awyB00 | 3.60.15.10 | Alpha Beta › 4-Layer Sandwich › Metallo-beta-lactamase; Chain A › Ribonuclease Z/Hydroxyacylglutathione hydrolase-like | 0.67 | 47.0 | 3.19e-01 | 72.2% | 25.2% |
| 1b8gA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.64 | 43.0 | 3.33e-01 | 81.0% | 32.9% |
| 3whjA00 | 6.10.140.1710 | Special › Helix non-globular › Helix Hairpins › | 0.63 | 48.0 | 4.22e-01 | 78.5% | 73.9% |
| 5yk4A04 | 1.10.1420.10 | Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › | 0.63 | 45.0 | 3.66e-01 | 73.4% | 76.5% |
| 3ffhA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.62 | 36.0 | 3.00e-01 | 73.4% | 34.8% |
| 3lyxB00 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.57 | 34.0 | 2.94e-01 | 100.0% | 38.3% |
| 1qr0A02 | 3.90.470.20 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › 4'-phosphopantetheinyl transferase domain | 0.57 | 39.0 | 3.55e-01 | 70.9% | 56.3% |
| 6ketA01 | 3.20.20.30 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain | 0.55 | 47.0 | 3.14e-01 | 96.2% | 32.8% |
| 1xa3A01 | 3.40.50.10540 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Crotonobetainyl-coa:carnitine coa-transferase; domain 1 | 0.55 | 44.0 | 2.95e-01 | 86.1% | 25.3% |
| 1e7uA05 | 1.10.1070.11 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › Phosphatidylinositol 3-/4-kinase, catalytic domain | 0.54 | 43.0 | 3.22e-01 | 84.8% | 83.2% |
| 2wa0A01 | 1.10.10.1200 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › MAGE homology domain, winged helix WH1 motif | 0.52 | 43.0 | 4.01e-01 | 89.9% | 83.2% |
| 1d5aA03 | 3.90.1600.10 | Alpha Beta › Alpha-Beta Complex › Palm domain of DNA polymerase › B family DNA polymerase, palm domain | 0.52 | 46.0 | 3.60e-01 | 96.2% | 67.1% |
| 2lsoA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 31.0 | 3.08e-01 | 92.4% | 56.6% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1005479 | 2485.3.1.1 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E | 0.87 | 81.0 | 5.11e-01 | 100.0% | 22.5% |
| 3321176 | 5051.1.1.6 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Aa_trans | 0.76 | 52.0 | 3.22e-01 | 70.9% | 71.1% |
| 2640765 | 2485.3.1.1 ↗ | a+b three layers › Thioredoxin-like › Major capsid protein gp5 › Major capsid protein gp5 › Phage_cap_E | 0.75 | 69.0 | 4.37e-01 | 100.0% | 22.1% |
| 4880604 | 4964.1.1.1 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › DNA_pol_A | 0.68 | 51.0 | 4.24e-01 | 81.0% | 72.5% |
| 4032929 | 3415.1.1.3 ↗ | alpha complex topology › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Concentrative nucleoside transporter › Nucleos_tra2_N,Nucleos_tra2_C | 0.67 | 57.0 | 3.56e-01 | 91.1% | 61.1% |
| 3631757 | 5051.1.1.10 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › AA_permease_2 | 0.64 | 57.0 | 3.46e-01 | 97.5% | 78.2% |
| 3605475 | 140.1.1.14 ↗ | alpha bundles › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases › tRNA-synt_1e | 0.63 | 49.0 | 3.47e-01 | 83.5% | 67.5% |
| 4026067 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.62 | 49.0 | 3.03e-01 | 84.8% | 56.5% |
| 3724170 | 603.5.1.17 ↗ | alpha bundles › STAT-like › FlgN-like › FlgN-like › SYF2 | 0.60 | 38.0 | 3.36e-01 | 91.1% | 45.5% |
| 4565864 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.59 | 52.0 | 3.48e-01 | 94.9% | 40.0% |
| 5045828 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.59 | 53.0 | 3.56e-01 | 100.0% | 42.3% |
| 3759086 | 3016.1.1.21 ↗ | a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › PDXDC1-like_cen | 0.58 | 47.0 | 3.81e-01 | 87.3% | 78.6% |
| 3646869 | 5059.1.1.1 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › EamA | 0.57 | 52.0 | 3.36e-01 | 98.7% | 57.6% |
| 3553058 | 605.3.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Nonstructural protein ns2, Nep, M1-binding domain › Nonstructural protein ns2, Nep, M1-binding domain | 0.56 | 49.0 | 4.05e-01 | 94.9% | 63.6% |
| 4974781 | 7577.1.1.6 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › DegT_DnrJ_EryC1 | 0.56 | 39.0 | 2.54e-01 | 72.2% | 73.5% |
| 3179262 | 109.4.1.160 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF3384 | 0.54 | 44.0 | 2.66e-01 | 86.1% | 23.3% |
| 3481300 | 613.1.1.0 ↗ | alpha complex topology › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) › Putative anticodon-binding domain of alanyl-tRNA synthetase (AlaRS) | 0.52 | 36.0 | 2.69e-01 | 74.7% | 39.6% |
| 3589866 | 101.1.2.66 ↗ | alpha arrays › HTH › HTH › winged helix domain › Mga | 0.50 | 30.0 | 2.97e-01 | 94.9% | 54.1% |
| 4463651 | 101.1.2.8 ↗ | alpha arrays › HTH › HTH › winged helix domain › Trans_reg_C | 0.50 | 32.0 | 2.95e-01 | 93.7% | 49.5% |