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OL615013.1__UGO46980.1__CHUBBYTHOR_42__00039
Bact-VirOL615013.1__UGO46980.1__CHUBBYTHOR_42__00039
Identity
- Accession:
- OL615013 ↗
- Kingdom:
- phage
Quality
78.9
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Pantevenvirales›
Ackermannviridae›
Agtrevirus›
Shigella_phage_ChubbyThor
TaxID: 2902744
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 146-270
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6bhdA03 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 29.0 | 3.77e-01 | 80.8% | 85.7% |
| 2x4jA01 | 2.30.30.600 | Mainly Beta › Roll › SH3 type barrels. › | 0.60 | 46.0 | 5.04e-01 | 98.4% | 100.0% |
| 3cpfA01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 30.0 | 3.85e-01 | 76.0% | 100.0% |
| 3k8uA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.52 | 35.0 | 3.46e-01 | 76.8% | 65.6% |
| 3zuaA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.51 | 34.0 | 3.36e-01 | 76.8% | 62.6% |
| 6biqC01 | 3.90.1720.10 | Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) | 0.50 | 30.0 | 3.10e-01 | 76.0% | 59.5% |
| 2x5gA00 | 3.30.720.60 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.50 | 29.0 | 3.35e-01 | 92.0% | 78.0% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4026957 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.65 | 33.0 | 4.43e-01 | 72.8% | 100.0% |
| 4342488 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.64 | 33.0 | 4.36e-01 | 75.2% | 96.8% |
| 5036621 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 30.0 | 4.21e-01 | 87.2% | 100.0% |
| 139950 | 4.1.1.126 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF5608 | 0.63 | 31.0 | 4.20e-01 | 87.2% | 100.0% |
| 3617111 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.63 | 34.0 | 3.87e-01 | 78.4% | 70.0% |
| 3267329 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 33.0 | 3.38e-01 | 76.0% | 50.4% |
| 3261395 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 30.0 | 3.95e-01 | 87.2% | 94.8% |
| 3230083 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.60 | 33.0 | 3.75e-01 | 77.6% | 71.1% |
| 4058174 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.60 | 32.0 | 4.14e-01 | 75.2% | 96.9% |
| 3570399 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 32.0 | 4.18e-01 | 88.0% | 100.0% |
| 3261235 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.59 | 32.0 | 3.79e-01 | 77.6% | 76.5% |
| 3914746 | 4.1.1.128 ↗ | beta barrels › SH3 › SH3 › SH3 › Tudor_4 | 0.59 | 29.0 | 3.57e-01 | 80.8% | 77.1% |
| 5077969 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 36.0 | 4.29e-01 | 97.6% | 95.0% |
| 4015071 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 33.0 | 4.12e-01 | 84.8% | 97.1% |
| 3389169 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.58 | 32.0 | 3.78e-01 | 78.4% | 78.8% |
| 3236058 | 4184.1.1.2 ↗ | beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b | 0.56 | 33.0 | 3.87e-01 | 76.8% | 84.7% |
| 4011604 | 4.1.1.13 ↗ | beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd | 0.56 | 33.0 | 4.03e-01 | 85.6% | 97.3% |
| 3798172 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.50 | 31.0 | 3.79e-01 | 83.2% | 97.5% |
| 4061621 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.50 | 43.0 | 3.73e-01 | 100.0% | 60.0% |
D2
high
residues 434-537
Domain cluster:
rep: MZ375356.1__QZB89873.1__T4583L_278__00224__D13-88
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF26926.1 best | Phage_T4_rIIB | 64.3 | 1.50e-17 | 96.2% | 19.8% |
D3
medium
residues 32-131
Domain cluster:
rep: KR296692.1__AKJ73862.1__SP38_260__00260__D1-85
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13384.13 best | HTH_23 | 31.2 | 2.10e-07 | 41.0% | 62.0% |
D4
medium
residues 283-417
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3ossC00 | 2.30.30.830 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 22.0 | 3.05e-01 | 70.4% | 80.0% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 24.0 | 2.69e-01 | 88.1% | 53.8% |
| 2m3xC02 | 2.40.10.360 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.51 | 24.0 | 3.12e-01 | 79.3% | 81.2% |
| 3fssA02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.50 | 26.0 | 3.09e-01 | 78.5% | 74.4% |