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OL631484.1__WCD43964.1__ECML606-1_000013__00013

Bact-Vir

OL631484.1__WCD43964.1__ECML606-1_000013__00013

Identity

Accession:
OL631484 ↗
Kingdom:
phage

Quality

75.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Escherichia_phage_ECML-606-1

TaxID: 2910940

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 639-725
PDB
Domain cluster: rep: MW073017.1__QPB08539.1__X__00060__D1038-1127
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF13884.12 best Peptidase_S74 31.7 2.00e-07 50.6% 72.4%
D2 medium residues 6-90
PDB
D3 medium residues 92-144
PDB
Domain cluster: rep: OM818331.1__UOK18351.1__SEA_BRUHMOMENT_35__00035__D131-183
D4 medium residues 245-336_414-426
PDB
Domain cluster: representative
D5 medium residues 427-532
PDB
Domain cluster: rep: KM979354.1__AJA41628.1__DT57C_000108__00108__D794-877
CATH (29)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ke7B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.75 45.0 4.13e-01 84.0% 47.4%
3f40A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 39.0 3.91e-01 82.1% 51.4%
2oojA00 2.40.350.10 Mainly Beta › Beta Barrel › AOC barrel-like › SO1590-like 0.70 56.0 5.21e-01 84.9% 75.6%
2pcsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.68 53.0 4.65e-01 81.1% 57.2%
4e1sA00 2.40.160.160 Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain 0.68 60.0 4.54e-01 95.3% 45.0%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.66 52.0 4.52e-01 84.9% 58.2%
2zylA02 3.90.380.10 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 0.66 53.0 4.20e-01 86.8% 45.2%
4bumX00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.65 53.0 3.83e-01 91.5% 32.2%
1t17A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.64 49.0 4.44e-01 85.8% 58.8%
3obaA05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.64 48.0 3.45e-01 78.3% 89.8%
1lf6A01 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.61 43.0 3.14e-01 71.7% 63.7%
2f1vA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.61 54.0 4.46e-01 95.3% 81.9%
2kd2A01 2.40.128.180 Mainly Beta › Beta Barrel › Lipocalin › 0.61 34.0 3.76e-01 73.6% 67.9%
4b0bB00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.61 46.0 3.90e-01 79.2% 92.9%
3eliA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 45.0 4.07e-01 78.3% 59.7%
3fljA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.60 44.0 3.97e-01 75.5% 58.2%
3mswA00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.59 53.0 4.86e-01 100.0% 89.2%
4nkbA01 3.30.1120.120 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.58 42.0 4.10e-01 90.6% 69.3%
3fzxA00 2.40.360.20 Mainly Beta › Beta Barrel › YmcC-like fold › 0.58 50.0 4.00e-01 94.3% 58.0%
7ufsA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.57 40.0 3.03e-01 72.6% 74.3%
2yfoA01 2.70.98.60 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › alpha-galactosidase from lactobacil brevis 0.56 46.0 3.36e-01 90.6% 84.7%
4akrA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.56 44.0 4.00e-01 84.9% 83.0%
7a0hA02 3.90.1150.210 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › F-actin capping protein, beta subunit 0.55 47.0 3.95e-01 92.5% 69.0%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.54 40.0 4.08e-01 89.6% 79.2%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.54 43.0 3.79e-01 85.8% 60.5%
7emfR01 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.54 38.0 3.20e-01 72.6% 77.7%
1yq2A05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.53 40.0 2.94e-01 80.2% 69.3%
6secA03 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 41.0 3.06e-01 87.7% 90.8%
1qftB00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 40.0 3.44e-01 84.9% 61.5%
ECOD (39)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3290683 243.1.1.18 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › SnoaL_2 0.79 48.0 4.45e-01 82.1% 50.0%
3281893 71.2.1.1 ↗ beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › Glycolipid_bind 0.77 59.0 4.84e-01 88.7% 45.9%
3932438 5084.5.1.33 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › DNAJC11_beta-barrel 0.71 58.0 4.36e-01 93.4% 36.1%
2362 71.2.1.1 ↗ beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › Glycolipid_bind 0.71 55.0 4.45e-01 80.2% 66.1%
3608121 5084.5.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.70 60.0 4.46e-01 92.5% 38.6%
3965061 5084.3.1.1 ↗ beta barrels › Outer membrane meander beta-barrels › Autotransporter › Autotransporter › Autotransporter 0.69 61.0 4.55e-01 95.3% 60.0%
2141857 12.3.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.65 45.0 3.23e-01 70.8% 74.9%
4273160 5084.5.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › MDM10 0.64 54.0 3.81e-01 91.5% 31.1%
4254174 4099.1.1.22 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › CENP-P 0.64 49.0 4.44e-01 82.1% 65.5%
3736010 12.3.1.6 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.63 48.0 3.32e-01 78.3% 88.9%
3913260 5087.1.1.1 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 › Vit_b-sht_shell 0.63 54.0 4.44e-01 93.4% 54.2%
3257844 71.1.1.16 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Ependymin_amoebozoa 0.62 52.0 4.15e-01 88.7% 89.5%
4466226 5087.1.1.1 ↗ beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 › Vit_b-sht_shell 0.62 47.0 4.81e-01 84.0% 82.9%
4188109 5084.5.1.10 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › MDM10 0.61 50.0 3.57e-01 92.5% 29.1%
4381748 241.1.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C 0.61 45.0 3.59e-01 76.4% 79.5%
3188325 3794.1.1.0 ↗ a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit 0.61 46.0 3.89e-01 78.3% 58.2%
3512069 5084.5.1.3 ↗ beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.60 49.0 3.99e-01 90.6% 46.5%
3892200 71.2.1.4 ↗ beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N 0.60 48.0 3.67e-01 84.0% 63.0%
4928822 5084.1.1.0 ↗ beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like 0.59 47.0 4.46e-01 85.8% 82.0%
5079639 12.3.1.0 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.59 44.0 3.19e-01 78.3% 81.0%
4964630 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.59 43.0 3.95e-01 84.0% 58.0%
862806 4200.1.1.2 ↗ beta barrels › YmcC-like › YmcC-like › YmcC-like › DUF3108_like 0.58 49.0 3.92e-01 93.4% 56.1%
3606839 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.58 38.0 3.59e-01 79.2% 54.6%
3831261 844.1.1.5 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › DUF3527 0.57 50.0 3.96e-01 97.2% 68.9%
3628642 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 51.0 3.53e-01 99.1% 65.2%
3559952 71.2.1.4 ↗ beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › CATIP_N 0.57 48.0 3.74e-01 92.5% 42.9%
None — 0.57 44.0 3.29e-01 84.9% 87.8%
3699994 243.1.1.0 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like 0.57 40.0 3.68e-01 78.3% 57.0%
3282130 3692.1.1.0 ↗ a+b two layers › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain › Ornithine cyclodeaminase-like enzymes dimerization domain 0.56 43.0 3.96e-01 83.0% 82.0%
5014022 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.55 43.0 3.44e-01 84.0% 90.5%
3900153 10.1.1.17 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Laminin_G_2 0.55 40.0 3.37e-01 95.3% 45.7%
3933168 9.1.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins 0.55 38.0 3.28e-01 73.6% 51.7%
4622524 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.52 41.0 3.07e-01 84.9% 85.1%
4051210 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.51 41.0 3.17e-01 90.6% 85.8%
5020831 881.4.1.2 ↗ a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › DUF4367 0.51 36.0 3.47e-01 72.6% 79.2%
4186209 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.51 43.0 3.33e-01 98.1% 97.8%
4274955 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.51 44.0 3.31e-01 99.1% 93.3%
3401172 1116.1.1.1 ↗ a+b two layers › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin-mucolipin domain › Polycystin_dom 0.51 39.0 3.09e-01 83.0% 89.8%
4302710 12.3.1.24 ↗ beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › YidC_periplas 0.50 42.0 3.29e-01 97.2% 100.0%
D6 medium residues 533-625
PDB