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OL658619.1__UGC98016.1__X__00016

Bact-Vir

OL658619.1__UGC98016.1__X__00016

Identity

Accession:
OL658619 ↗
Kingdom:
phage

Quality

94.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Oceanospirillum_phage_vB_OsaM_PD0307

TaxID: 2900133

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-60
PDB
Domain cluster: representative
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lfhA00 4.10.280.10 Few Secondary Structures › Irregular › MYOD Basic-Helix-Loop-Helix Domain, subunit B › Helix-loop-helix DNA-binding domain 0.70 46.0 4.38e-01 74.6% 58.8%
2krxA01 3.90.940.40 Alpha Beta › Alpha-Beta Complex › Eukaryotic RPB6 RNA polymerase subunit › Protein CHLORORESPIRATORY REDUCTION 7 0.61 49.0 4.70e-01 94.9% 90.3%
4c0kA01 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.57 45.0 3.83e-01 100.0% 51.5%
3rssA02 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.57 45.0 2.92e-01 88.1% 96.8%
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.56 43.0 3.86e-01 84.7% 75.9%
2nscA01 3.30.70.1050 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Trigger factor ribosome-binding domain 0.54 41.0 3.93e-01 91.5% 98.7%
5z3mB00 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 44.0 3.45e-01 100.0% 89.5%
3l4aA00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.54 44.0 3.53e-01 91.5% 76.9%
4ottA02 1.10.246.130 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain 0.52 39.0 3.26e-01 86.4% 66.9%
3ilsA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 37.0 2.46e-01 76.3% 34.0%
5nl6A02 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.52 36.0 2.95e-01 71.2% 82.4%
4azcA02 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.51 35.0 3.54e-01 72.9% 96.6%
5zjgA02 1.10.246.130 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain 0.50 40.0 3.36e-01 93.2% 77.7%
1dp3A00 1.10.10.450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › TraM protein, DNA-binding 0.50 34.0 3.50e-01 72.9% 89.1%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4093401 4187.2.1.1 ↗ a+b two layers › NosL/MerB-like › DUF2233 › DUF2233 › NAGPA 0.67 45.0 3.86e-01 74.6% 43.2%
2849980 143.2.1.0 ↗ alpha arrays › PABP domain-like › Ribosomal protein L20 › Ribosomal protein L20 0.61 39.0 3.23e-01 78.0% 34.2%
3256369 130.1.1.0 ↗ alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.59 48.0 4.62e-01 93.2% 80.0%
3286459 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 49.0 3.46e-01 96.6% 46.2%
3733599 2004.1.1.94 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP_bind_1 0.55 39.0 2.43e-01 74.6% 72.1%
4527734 101.1.1.36 ↗ alpha arrays › HTH › HTH › Three-helical HTH › Homeobox_KN 0.53 38.0 3.67e-01 74.6% 73.8%
3598988 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.53 47.0 3.73e-01 100.0% 100.0%
None — 0.50 41.0 2.64e-01 98.3% 31.6%
3660143 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.50 38.0 2.54e-01 79.7% 62.6%