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OL690335.1UHS65811.12PHSA1_0089__00089

Bact-Vir

OL690335.1__UHS65811.1__2PHSA1_0089__00089

Identity

Accession:: OL690335 ↗
Kingdom:: phage

Quality

87.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Triavirus› Staphylococcus_phage_2PHSA1

TaxID: 2900270

Cluster

View cluster (9 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-124

PDB

Domain cluster: representative

CATH (6)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1vwxS02	3.10.20.10	Alpha Beta › Roll › Ubiquitin-like (UB roll) ›	0.62	28.0	3.41e-01	79.0%	64.5%
1u84A00	1.10.340.20	Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain	0.59	37.0	4.37e-01	93.3%	92.6%
2gfhA02	1.20.120.710	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain	0.59	36.0	4.14e-01	84.0%	84.9%
2cg5B00	1.10.1200.10	Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like	0.57	29.0	3.79e-01	78.2%	84.5%
2cgqA00	1.10.1200.10	Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like	0.57	32.0	3.94e-01	82.4%	87.8%
2dj6B00	3.30.479.10	Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD	0.55	33.0	3.37e-01	73.1%	60.0%

ECOD (21)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4033826	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.91	70.0	7.85e-01	81.5%	98.9%
4014593	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.82	39.0	5.54e-01	70.6%	98.2%
3198979	101.43.1.0 ↗	alpha arrays › HTH › Phage G20C small terminase N-terminal domain › Phage G20C small terminase N-terminal domain	0.81	41.0	5.78e-01	78.2%	100.0%
3455132	101.1.1.121 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3	0.72	43.0	4.32e-01	71.4%	58.3%
3589265	101.1.2.145 ↗	alpha arrays › HTH › HTH › winged helix domain › HHH_4	0.72	45.0	5.14e-01	85.7%	84.4%
3709551	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.71	36.0	4.89e-01	70.6%	96.7%
4229570	3018.1.1.0 ↗	a+b two layers › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like › MesJ substrate recognition domain-like	0.70	33.0	4.24e-01	84.0%	78.5%
3230421	4970.1.1.0 ↗	alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I	0.69	32.0	3.97e-01	72.3%	69.3%
3235659	101.1.1.102 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Lin-8	0.68	38.0	4.85e-01	70.6%	98.5%
3690869	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.64	42.0	4.70e-01	95.8%	83.2%
4520559	592.2.1.1 ↗	alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF1871	0.59	37.0	4.30e-01	93.3%	88.2%
5002539	101.1.2.906 ↗	alpha arrays › HTH › HTH › winged helix domain › DUF1016_N	0.58	34.0	3.63e-01	80.7%	63.8%
3330988	101.1.1.121 ↗	alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3	0.57	39.0	3.91e-01	70.6%	98.4%
3641165	592.6.1.3 ↗	alpha arrays › PWI domain-like › Pre-mRNA-splicing helicase BRR2 plug domain › Pre-mRNA-splicing helicase BRR2 plug domain › DExH14_plug	0.57	41.0	4.27e-01	100.0%	80.0%
4246965	132.1.1.1 ↗	alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding	0.54	35.0	3.97e-01	82.4%	86.7%
3960055	592.1.1.14 ↗	alpha arrays › PWI domain-like › PWI domain › PWI domain › Transposase_mut	0.54	39.0	3.83e-01	91.6%	69.2%
3417440	708.1.1.0 ↗	beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain	0.53	46.0	4.45e-01	93.3%	91.9%
3194068	132.1.1.1 ↗	alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › PP-binding	0.52	33.0	3.87e-01	79.8%	89.4%
4016944	132.1.1.6 ↗	alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › DUF7080	0.52	35.0	3.85e-01	80.7%	86.3%
3188707	132.1.1.6 ↗	alpha bundles › ACP-like › Acyl-carrier protein (ACP) › Acyl-carrier protein (ACP) › DUF7080	0.51	33.0	3.62e-01	81.5%	78.0%
4029333	2004.1.1.232 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEXQc_Suv3	0.50	45.0	3.30e-01	100.0%	90.7%

D2 high residues 356-488

PDB

Domain cluster: rep: MK348510.1__QAY02728.1__PFS2_064__00064__D13-127

CATH (11)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1mzbA01	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.65	34.0	4.26e-01	91.7%	81.7%
4kt5C00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.63	35.0	4.22e-01	93.2%	81.8%
3l4gC01	3.30.1370.240	Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 ›	0.61	35.0	3.92e-01	94.0%	71.4%
1ul7A00	3.30.310.80	Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1	0.60	27.0	3.03e-01	85.7%	51.0%
5dymA00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.59	35.0	4.03e-01	96.2%	80.2%
2od5A00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.59	35.0	4.13e-01	94.7%	85.7%
2qbyB03	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.55	33.0	3.94e-01	96.2%	87.9%
3buxB02	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.53	26.0	3.12e-01	90.2%	67.4%
4ctaA02	3.30.70.2860	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.51	22.0	2.91e-01	77.4%	72.0%
3mwbB03	3.30.70.260	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain	0.51	27.0	3.04e-01	85.0%	67.4%
2uvaG03	3.30.70.3320	Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits ›	0.50	26.0	2.92e-01	82.0%	59.3%

ECOD (19)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
5062643	101.1.2.138 ↗	alpha arrays › HTH › HTH › winged helix domain › DUF3860	0.61	35.0	4.47e-01	92.5%	96.2%
4980261	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.60	37.0	4.11e-01	98.5%	77.1%
3788427	101.1.2.207 ↗	alpha arrays › HTH › HTH › winged helix domain › TFC3_eWH	0.60	37.0	4.26e-01	95.5%	83.0%
3602673	2004.1.1.1085 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › PF30184	0.60	36.0	3.93e-01	96.2%	71.8%
4971711	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.58	39.0	4.00e-01	97.0%	71.2%
4314672	101.1.2.101 ↗	alpha arrays › HTH › HTH › winged helix domain › Cdc6_C	0.57	34.0	3.79e-01	96.2%	74.3%
4971999	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.57	38.0	3.98e-01	98.5%	72.8%
4997255	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.57	34.0	3.85e-01	96.2%	79.0%
4966558	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.56	34.0	4.09e-01	96.2%	92.9%
5065934	242.1.1.0 ↗	a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases	0.55	33.0	3.94e-01	96.2%	91.8%
4117256	101.1.2.88 ↗	alpha arrays › HTH › HTH › winged helix domain › Dimerisation	0.55	37.0	3.77e-01	96.2%	70.0%
4996402	242.1.1.0 ↗	a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases	0.55	33.0	3.79e-01	99.2%	83.2%
5058376	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.53	34.0	3.87e-01	98.5%	88.4%
4386736	305.1.1.2 ↗	a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L_2	0.53	26.0	3.11e-01	78.2%	66.7%
2427478	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.52	41.0	3.52e-01	95.5%	52.9%
4413612	242.1.1.0 ↗	a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases	0.51	35.0	3.65e-01	100.0%	76.7%
4381748	241.1.1.2 ↗	a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › Autophagy_act_C	0.51	35.0	3.07e-01	70.7%	84.7%
3443785	101.1.2.137 ↗	alpha arrays › HTH › HTH › winged helix domain › OST-HTH	0.51	34.0	3.80e-01	95.5%	89.0%
5003912	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.51	41.0	3.84e-01	98.5%	70.6%

D3 medium residues 137-177_304-353

PDB

Domain cluster: rep: OR188719.1__WNO25026.1__NKJIMNAM_00045__00045__D431-480_602-648

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05272.18 best	VapE-like_dom	50.4	2.80e-13	53.8%	21.2%

CATH (7)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4i9oA00	1.10.246.20	Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Coactivator CBP, KIX domain	0.60	34.0	3.70e-01	81.3%	66.7%
3tklB01	1.20.58.90	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.58	35.0	4.07e-01	79.1%	87.1%
1vs5O00	1.10.287.10	Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding	0.54	42.0	4.26e-01	97.8%	87.5%
1x9fA00	1.10.490.10	Mainly Alpha › Orthogonal Bundle › Globin-like › Globins	0.53	38.0	3.25e-01	73.6%	59.9%
3rmgA00	1.10.600.10	Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase	0.51	44.0	3.15e-01	98.9%	51.8%
3u66A00	1.25.40.590	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Type IV / VI secretion system, DotU	0.50	43.0	3.55e-01	95.6%	69.0%
4nmyA01	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.50	40.0	3.18e-01	87.9%	94.9%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4514726	3317.1.1.0 ↗	alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain	0.61	31.0	3.64e-01	73.6%	69.2%
4091184	4044.1.1.1 ↗	alpha bundles › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Helical bundle domain in prismane-like proteins › Prismane	0.59	31.0	2.92e-01	75.8%	39.1%
3273264	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.52	37.0	3.41e-01	74.7%	63.5%
5017862	601.7.1.0 ↗	alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain	0.51	34.0	3.09e-01	89.0%	48.8%

D4 medium residues 178-303

PDB

Domain cluster: rep: highly_derived_D5-like_helicase-primase__YP_003406787__Marseillevirus_marseillevirus__694581__D555-677

Pfam (2)

Accession	Name	Score	E-value	Q cov	HMM cov
PF05272.18 best	VapE-like_dom	166.7	7.70e-49	100.0%	57.1%
PF19263.6	DUF5906	35.1	2.70e-08	83.3%	100.0%