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OL742560.1__UKH48299.1__SEA_LILMAC1015_12__00012

Bact-Vir

OL742560.1__UKH48299.1__SEA_LILMAC1015_12__00012

Identity

Accession:
OL742560 ↗
Kingdom:
phage

Quality

87.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Berryhillviridae› Lilmacvirus› Arthrobacter_phage_Lilmac1015

TaxID: 2912653

Cluster

View cluster (19 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-172
PDB
Domain cluster: rep: MT764210__UXF49854.1__7841G1D8-26__00026__D257-398
CATH (31)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6toaF01 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.83 62.0 7.04e-01 97.7% 100.0%
4acvA00 3.30.2000.30 Alpha Beta › 2-Layer Sandwich › STM4215-like › 0.82 56.0 6.62e-01 99.4% 98.3%
2gjvA00 3.30.2000.10 Alpha Beta › 2-Layer Sandwich › STM4215-like › Phage tail protein-like 0.78 60.0 6.63e-01 100.0% 98.5%
2fbjH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.74 31.0 4.81e-01 76.0% 94.5%
2rjzA02 3.30.70.60 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S6/Translation elongation factor EF1B 0.73 41.0 5.29e-01 99.4% 94.9%
2y3uA02 3.30.980.50 Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › 0.68 42.0 4.94e-01 98.2% 90.3%
1cg2A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.68 35.0 4.32e-01 84.8% 77.3%
4hudA01 3.30.2000.40 Alpha Beta › 2-Layer Sandwich › STM4215-like › Myoviridae tail sheath stabiliser 0.67 63.0 5.89e-01 100.0% 82.4%
4q7aC02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 35.0 4.26e-01 92.4% 76.9%
5xoyB02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.67 34.0 4.23e-01 84.2% 76.6%
2rb7A02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.66 34.0 4.14e-01 86.0% 77.6%
4ewtA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 35.0 4.20e-01 84.2% 77.4%
3fbqA02 2.60.40.1640 Mainly Beta › Sandwich › Immunoglobulin-like › Conserved domain protein. 0.63 34.0 3.74e-01 99.4% 61.9%
3igqC00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.62 40.0 3.96e-01 87.7% 59.8%
2qrrA00 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.61 27.0 3.41e-01 81.9% 67.0%
3bf2A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.61 32.0 3.71e-01 93.6% 68.8%
3w1eA02 3.40.50.10610 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ABC-type transport auxiliary lipoprotein component 0.60 41.0 4.13e-01 99.4% 67.2%
3qkbA00 3.30.110.70 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › Hypothetical protein apc22750. Chain B 0.60 33.0 4.39e-01 90.6% 98.9%
2r76A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.59 31.0 3.54e-01 91.2% 65.2%
2r01A01 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.58 44.0 4.66e-01 97.7% 88.2%
3jafA01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.56 41.0 3.83e-01 86.0% 59.2%
8eisA01 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.55 39.0 3.76e-01 83.6% 61.5%
2q7aA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 35.0 3.75e-01 96.5% 71.1%
1vr8A00 3.40.1000.20 Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › TM1622-like 0.55 30.0 3.30e-01 97.1% 64.4%
4exkA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 33.0 4.21e-01 79.5% 100.0%
4uxuA00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.54 39.0 3.63e-01 86.0% 58.6%
2q9kA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 33.0 3.58e-01 98.2% 70.1%
1w66A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.52 40.0 3.72e-01 79.5% 91.8%
2bj0A00 2.70.170.10 Mainly Beta › Distorted Sandwich › Acetylcholine Binding Protein; Chain: A, › Neurotransmitter-gated ion-channel ligand-binding domain 0.51 45.0 4.27e-01 97.7% 81.3%
2cjaA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.50 46.0 3.74e-01 100.0% 89.8%
5zg8A02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.50 45.0 3.68e-01 97.7% 91.3%
ECOD (27)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5454 304.124.1.2 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Gp37 0.80 60.0 6.77e-01 100.0% 99.3%
5040945 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.79 65.0 6.89e-01 100.0% 97.3%
5083880 304.124.1.0 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like 0.77 63.0 6.79e-01 98.8% 100.0%
4954550 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.76 49.0 5.83e-01 97.1% 95.7%
4562028 310.3.1.0 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related 0.70 45.0 4.81e-01 98.2% 74.5%
4054495 11.1.1.96 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.69 33.0 4.19e-01 78.9% 76.0%
3943477 310.3.1.9 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › P2_Phage_GpR 0.69 49.0 5.54e-01 100.0% 94.6%
5003262 304.124.1.10 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › Pvc16_N 0.69 65.0 6.52e-01 100.0% 100.0%
4888780 304.124.1.5 ↗ a+b two layers › Alpha-beta plaits › Phage tail protein-like › Phage tail protein-like › T4-gp15_tss 0.69 64.0 5.74e-01 100.0% 82.9%
4986421 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.69 34.0 4.23e-01 90.1% 75.2%
3788569 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 39.0 4.48e-01 88.3% 82.4%
3725599 11.1.1.233 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_mannosidase 0.63 32.0 4.11e-01 81.3% 82.0%
3163625 7503.1.1.4 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE 0.63 34.0 3.64e-01 94.2% 59.3%
4136515 310.3.1.23 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › RP854 0.62 44.0 4.56e-01 98.8% 77.5%
196538 7503.1.1.4 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › LptE 0.59 31.0 3.54e-01 91.2% 65.2%
3773175 883.1.1.1 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP 0.59 42.0 4.16e-01 74.3% 95.7%
3582831 11.12.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Nicotinic receptor ligand binding domain-like › Nicotinic receptor ligand binding domain-like 0.53 40.0 3.49e-01 86.0% 50.8%
3707804 11.1.5.59 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4139 0.53 38.0 3.92e-01 83.0% 78.1%
3699878 12.1.1.94 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF4139 0.53 37.0 4.23e-01 77.2% 97.6%
3478219 12.1.1.94 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF4139 0.52 39.0 4.29e-01 81.9% 97.0%
3708605 11.1.5.59 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4139 0.52 35.0 4.04e-01 79.5% 93.6%
3934435 4081.1.1.13 ↗ beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › DUF4139 0.52 39.0 4.29e-01 81.9% 96.4%
3474773 11.1.5.59 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › DUF4139 0.52 38.0 4.25e-01 78.9% 99.2%
3912164 10.32.1.20 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › FBA 0.51 41.0 3.69e-01 83.0% 86.5%
3598105 11.1.5.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f 0.51 35.0 4.12e-01 76.0% 100.0%
5032975 314.1.1.1 ↗ a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2 0.51 45.0 3.64e-01 95.3% 90.9%
3217107 12.1.1.94 ↗ beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › DUF4139 0.50 39.0 4.24e-01 81.3% 100.0%