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OL828290.1__ULA52446.1__X__00210

Bact-Vir

OL828290.1__ULA52446.1__X__00210

Identity

Accession:
OL828290 ↗
Kingdom:
phage

Quality

76.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Pantevenvirales› Straboviridae› Karamvirus› Enterobacter_phage_vB-EclM_KMB19

TaxID: 2917963

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-95
PDB
Domain cluster: rep: KP202158.1__AJD82016.1__YenMTG1_206__00206__D2-88
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2heqA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.62 37.0 4.41e-01 95.6% 98.1%
3dxoB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 41.0 3.82e-01 80.0% 83.8%
4dgkA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 41.0 3.46e-01 90.0% 82.4%
ECOD (3)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3928939 206.1.1.70 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1 0.55 39.0 2.76e-01 75.6% 33.9%
4981498 5073.1.2.0 ↗ alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Copper efflux ATPase transmembrane domain 0.51 43.0 2.71e-01 97.8% 65.8%
5061514 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 43.0 3.40e-01 94.4% 96.3%
D2 high residues 102-161
PDB
Domain cluster: representative
CATH (35)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y6kR01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.71 57.0 4.74e-01 100.0% 51.0%
3pyfA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.68 60.0 4.61e-01 100.0% 94.2%
2iboA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.65 57.0 5.07e-01 100.0% 89.9%
1s7hA02 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.64 55.0 5.00e-01 98.3% 98.8%
2gx8A02 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 53.0 4.60e-01 100.0% 94.9%
1vk8A00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 51.0 4.57e-01 100.0% 88.2%
2iiiA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.61 53.0 4.27e-01 100.0% 93.3%
4cgyA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.60 51.0 4.13e-01 100.0% 96.1%
1a7gE00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.60 51.0 4.69e-01 100.0% 100.0%
3oq2A00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 50.0 4.34e-01 100.0% 77.8%
4mt1A07 3.30.70.1440 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Multidrug efflux transporter AcrB pore domain 0.59 49.0 4.25e-01 100.0% 90.2%
2nyiA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.59 50.0 4.58e-01 98.3% 97.5%
1zpwX00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 49.0 4.55e-01 100.0% 85.4%
1h72C02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.58 49.0 3.86e-01 98.3% 94.1%
3bn6A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.57 49.0 3.63e-01 98.3% 36.7%
1ri6A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 48.0 3.08e-01 98.3% 100.0%
5yxgB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 45.0 3.78e-01 98.3% 60.5%
2pvpA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.56 40.0 2.99e-01 75.0% 43.8%
2xtsA02 2.60.40.650 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 45.0 3.57e-01 98.3% 42.3%
2mq8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.55 47.0 3.92e-01 100.0% 91.1%
2od6C00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 47.0 3.97e-01 100.0% 94.4%
3kwrA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.54 43.0 4.05e-01 98.3% 91.6%
1s55A00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.53 45.0 3.42e-01 98.3% 37.8%
3hrzC01 2.20.210.20 Mainly Beta › Single Sheet › ubp-family deubiquitinating enzyme fold › 0.53 39.0 4.18e-01 96.7% 95.9%
1ykdB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.53 42.0 3.00e-01 88.3% 98.9%
4msvA01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.53 46.0 3.58e-01 100.0% 44.5%
6dgiA02 3.30.470.20 Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain 0.53 40.0 3.14e-01 85.0% 75.7%
4gxbA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 37.0 3.36e-01 100.0% 49.5%
3up6A01 2.60.40.2580 Mainly Beta › Sandwich › Immunoglobulin-like › 0.53 45.0 3.37e-01 100.0% 56.6%
3im1A03 2.60.40.150 Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain 0.52 42.0 3.46e-01 100.0% 47.0%
2j58A03 3.30.1950.10 Alpha Beta › 2-Layer Sandwich › wza like fold › wza like domain 0.52 43.0 4.03e-01 100.0% 98.8%
3r8yA01 3.30.70.250 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding 0.52 43.0 4.25e-01 98.3% 89.4%
1eqtA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 30.0 2.90e-01 81.7% 49.3%
2j73A00 2.60.40.1110 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 38.0 3.34e-01 100.0% 51.5%
3cu7A10 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.50 41.0 3.49e-01 100.0% 59.1%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3718180 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.73 67.0 5.69e-01 100.0% 91.6%
4089959 304.1.1.1 ↗ a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.70 61.0 4.62e-01 100.0% 90.0%
4289898 304.1.1.1 ↗ a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.69 60.0 4.81e-01 100.0% 100.0%
4501630 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.68 59.0 5.32e-01 95.0% 95.0%
5029243 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.68 58.0 4.66e-01 96.7% 100.0%
4548879 304.1.1.1 ↗ a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.66 58.0 4.53e-01 100.0% 92.5%
4045503 304.5.1.0 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.66 57.0 5.34e-01 98.3% 98.7%
4402584 304.56.1.2 ↗ a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 0.65 56.0 5.10e-01 96.7% 86.3%
3953647 304.26.1.1 ↗ a+b two layers › Alpha-beta plaits › MTH1187/YkoF-like › MTH1187/YkoF-like › Thiamine_BP 0.65 56.0 4.88e-01 100.0% 82.1%
4945939 304.25.1.11 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › Peptidase_M20 0.64 54.0 4.57e-01 100.0% 98.2%
4971256 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.64 55.0 4.35e-01 98.3% 100.0%
4373827 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.64 55.0 4.91e-01 100.0% 87.5%
5075567 304.25.1.0 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain 0.64 53.0 4.38e-01 95.0% 99.1%
4111809 304.1.1.1 ↗ a+b two layers › Alpha-beta plaits › GHMP Kinase, C-terminal domain › GHMP Kinase, C-terminal domain › GHMP_kinases_C 0.63 54.0 4.26e-01 100.0% 92.6%
4174584 304.25.1.1 ↗ a+b two layers › Alpha-beta plaits › Bacterial exopeptidase dimerisation domain › Bacterial exopeptidase dimerisation domain › M20_dimer 0.63 53.0 4.34e-01 100.0% 90.0%
4345964 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.62 54.0 4.68e-01 100.0% 81.1%
4223968 304.5.1.7 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF2179 0.62 54.0 4.94e-01 100.0% 93.8%
4449431 331.10.2.1 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc 0.62 54.0 4.30e-01 100.0% 91.2%
5004549 304.5.1.2 ↗ a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF190 0.62 53.0 4.45e-01 100.0% 92.6%
None — 0.61 51.0 3.28e-01 96.7% 98.4%
4932798 304.8.1.81 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › REP_ORF2-G2P 0.61 52.0 3.81e-01 100.0% 58.3%
3480521 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.58 50.0 4.42e-01 98.3% 86.7%
3492350 304.9.1.1 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.58 49.0 4.25e-01 98.3% 78.0%
5032480 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 48.0 4.08e-01 100.0% 84.8%
3561036 10.2.1.0 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) 0.56 48.0 3.41e-01 100.0% 30.8%
5077254 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.55 45.0 2.67e-01 90.0% 24.9%
4265513 304.147.1.1 ↗ a+b two layers › Alpha-beta plaits › Tetrahydrodipicolinate acetyltransferase N-terminal domain › Tetrahydrodipicolinate acetyltransferase N-terminal domain › DapH_N 0.55 45.0 4.59e-01 98.3% 96.7%
5068930 303.1.1.1 ↗ a+b four layers › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › Pyruvoyl-dependent histidine and arginine decarboxylases › PvlArgDC 0.54 46.0 3.50e-01 100.0% 44.7%
3968676 2492.1.1.18 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.54 42.0 3.57e-01 100.0% 48.7%
1886885 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.54 40.0 2.92e-01 85.0% 78.6%
2507067 11.1.4.36 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › SpaA 0.54 43.0 3.39e-01 98.3% 47.1%
3231885 10.32.1.0 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.54 46.0 3.62e-01 98.3% 45.6%
140694 10.2.1.69 ↗ beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Rhv_5 0.54 45.0 3.05e-01 98.3% 41.9%
3533957 10.1.1.10 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › MAM 0.53 46.0 3.52e-01 100.0% 41.4%
3388100 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.53 42.0 2.64e-01 91.7% 32.2%
4305531 10.32.1.8 ↗ beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › CBM_4_9 0.53 45.0 3.41e-01 100.0% 38.1%
4672212 6016.1.1.1 ↗ a+b two layers › Domain 1 of outer membrane lipoprotein Wza › Domain 1 of outer membrane lipoprotein Wza › Domain 1 of outer membrane lipoprotein Wza › Poly_export 0.53 44.0 3.90e-01 100.0% 95.8%
3782191 2003.1.5.26 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_28 0.52 42.0 2.59e-01 91.7% 81.7%
2529174 3268.1.1.2 ↗ a+b two layers › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › N-terminal domain in xanthine dehydrogenase › BH1974-like_central 0.52 43.0 4.04e-01 96.7% 77.9%
5027087 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 42.0 3.79e-01 100.0% 65.6%
5038720 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.50 42.0 3.40e-01 100.0% 47.5%
3967995 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.50 42.0 2.53e-01 91.7% 18.3%