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OL829978.1__UMO76330.1__SEA_TOMAS_176__00141
Bact-VirOL829978.1__UMO76330.1__SEA_TOMAS_176__00141
Identity
- Accession:
- OL829978 ↗
- Kingdom:
- phage
Quality
82.5
mean pLDDT
Taxonomy
Heunggongvirae›
Uroviricota›
Caudoviricetes›
Stanwilliamsviridae›
Tomasvirus›
Streptomyces_phage_Tomas
TaxID: 2914443
Cluster
View cluster (23 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 30-100
Domain cluster:
rep: NC_054726.1__YP_010059639.1__KHQ86_gp136__00163__D59-136
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF05305.20 best | DUF732 | 47.8 | 2.10e-12 | 97.2% | 94.4% |
CATH (26)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h20A04 | 1.10.1240.50 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.78 | 53.0 | 4.91e-01 | 70.4% | 65.2% |
| 1uaaA02 | 1.10.10.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.66 | 57.0 | 5.64e-01 | 97.2% | 100.0% |
| 1b0bA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.65 | 56.0 | 4.59e-01 | 100.0% | 70.2% |
| 3h4cA02 | 1.10.472.110 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › | 0.65 | 51.0 | 4.48e-01 | 100.0% | 56.4% |
| 4fcyA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.62 | 52.0 | 5.05e-01 | 98.6% | 83.3% |
| 2raaA00 | 3.40.920.10 | Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate-ferredoxin Oxidoreductase; domain 3 › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III | 0.62 | 53.0 | 4.03e-01 | 100.0% | 47.2% |
| 3abbA00 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.61 | 53.0 | 3.38e-01 | 100.0% | 56.1% |
| 2w31A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.61 | 51.0 | 4.14e-01 | 98.6% | 54.6% |
| 1fc3B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 51.0 | 4.62e-01 | 100.0% | 96.0% |
| 6d2qA02 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.59 | 41.0 | 3.71e-01 | 73.2% | 51.9% |
| 2k3qA00 | 1.10.274.70 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain | 0.59 | 44.0 | 3.86e-01 | 83.1% | 74.6% |
| 5xsoA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 43.0 | 4.29e-01 | 100.0% | 75.0% |
| 1rp3A01 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.58 | 42.0 | 3.96e-01 | 76.1% | 75.3% |
| 1y8aA02 | 1.10.3870.10 | Mainly Alpha › Orthogonal Bundle › AF1437-like domain fold › AF1437-like domain superfamily | 0.58 | 41.0 | 3.56e-01 | 76.1% | 83.6% |
| 2cwoA01 | 1.20.58.1200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RNA silencing suppressor P21, N-terminal domain | 0.57 | 39.0 | 3.89e-01 | 71.8% | 74.3% |
| 3t6gB00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.56 | 40.0 | 3.26e-01 | 73.2% | 77.6% |
| 3qsgA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.56 | 40.0 | 3.47e-01 | 76.1% | 96.5% |
| 3h37A03 | 1.20.58.1960 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.55 | 45.0 | 3.82e-01 | 95.8% | 81.2% |
| 6xz3A01 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.54 | 37.0 | 3.24e-01 | 73.2% | 85.5% |
| 4fqnC00 | 1.20.1160.20 | Mainly Alpha › Up-down Bundle › Paired amphipathic helix 2 (pah2 repeat) › | 0.54 | 44.0 | 4.27e-01 | 100.0% | 81.2% |
| 1v4aA01 | 1.10.4050.10 | Mainly Alpha › Orthogonal Bundle › Nucleotidyltransferase substrate binding subunit/domain fold › Glutamine synthase adenylyltransferase GlnE | 0.53 | 45.0 | 4.01e-01 | 100.0% | 74.3% |
| 1td6A01 | 1.20.1480.10 | Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › hypothetical protein mp506/mpn330, domain 1 | 0.53 | 44.0 | 3.93e-01 | 93.0% | 63.7% |
| 3m7gA02 | 1.10.8.1010 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.53 | 38.0 | 3.49e-01 | 76.1% | 69.5% |
| 3d85C00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.51 | 39.0 | 3.21e-01 | 83.1% | 92.5% |
| 3tjtA01 | 1.10.287.990 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Fe,Mn superoxide dismutase (SOD) domain | 0.51 | 35.0 | 3.54e-01 | 91.5% | 74.6% |
| 1r6bX03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.50 | 40.0 | 3.80e-01 | 90.1% | 89.8% |
ECOD (36)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3954237 | 532.2.1.16 ↗ | alpha arrays › Type III secretion system domain-like › Type III secretion system domains › Type III secretion system domains › DUF732 | 0.92 | 85.0 | 8.15e-01 | 98.6% | 86.3% |
| 3291410 | 592.2.1.0 ↗ | alpha arrays › PWI domain-like › YugE-like › YugE-like | 0.89 | 80.0 | 7.90e-01 | 97.2% | 100.0% |
| 5030241 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.85 | 58.0 | 6.23e-01 | 90.1% | 83.3% |
| 4995679 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.83 | 56.0 | 6.62e-01 | 71.8% | 100.0% |
| 5027591 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.82 | 61.0 | 6.83e-01 | 90.1% | 100.0% |
| 4983993 | 101.1.3.0 ↗ | alpha arrays › HTH › HTH › tetra-helical, LuxR-like | 0.78 | 55.0 | 5.94e-01 | 100.0% | 88.3% |
| 4336911 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.74 | 52.0 | 5.30e-01 | 73.2% | 75.7% |
| 5042947 | 101.35.1.0 ↗ | alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX | 0.67 | 43.0 | 4.88e-01 | 85.9% | 92.0% |
| 3423523 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.66 | 47.0 | 4.36e-01 | 74.6% | 60.0% |
| 4995712 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.66 | 48.0 | 4.36e-01 | 76.1% | 73.7% |
| 3583807 | 592.1.1.0 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain | 0.65 | 53.0 | 5.30e-01 | 98.6% | 88.0% |
| 3473556 | 592.1.1.7 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › PF26091 | 0.65 | 53.0 | 5.41e-01 | 98.6% | 97.1% |
| 4411012 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.63 | 55.0 | 4.16e-01 | 100.0% | 40.6% |
| 3906253 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.63 | 48.0 | 4.17e-01 | 100.0% | 51.7% |
| 3222400 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.62 | 49.0 | 4.60e-01 | 100.0% | 70.0% |
| 5036615 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.62 | 40.0 | 3.55e-01 | 100.0% | 48.4% |
| 4939465 | 622.1.1.0 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain | 0.62 | 43.0 | 3.73e-01 | 74.6% | 80.0% |
| 4940618 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.62 | 45.0 | 4.37e-01 | 78.9% | 75.0% |
| 3566449 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.62 | 48.0 | 4.29e-01 | 100.0% | 59.0% |
| 3574413 | 603.2.1.0 ↗ | alpha bundles › STAT-like › STAT › STAT | 0.61 | 42.0 | 3.88e-01 | 70.4% | 77.8% |
| 5074415 | 2004.1.3.1 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › Pyruvate-ferredoxin oxidoreductase, PFOR, domain III › POR | 0.61 | 53.0 | 4.00e-01 | 100.0% | 52.4% |
| 3936170 | 4964.1.1.0 ↗ | alpha arrays › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I › helical bundle in Bacillus stearothermophilus-like DNA polymerase I | 0.61 | 54.0 | 4.29e-01 | 100.0% | 71.0% |
| 3926730 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.60 | 48.0 | 4.34e-01 | 100.0% | 61.9% |
| 3301471 | 5067.1.1.17 ↗ | alpha bundles › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › Multidrug efflux transporter AcrB transmembrane domain › AtTam38 | 0.60 | 50.0 | 4.48e-01 | 100.0% | 75.5% |
| 3187418 | 601.1.2.149 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) › PF30922 | 0.59 | 41.0 | 3.54e-01 | 71.8% | 80.0% |
| 3248700 | 3919.1.1.2 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › COMM_HN | 0.59 | 51.0 | 4.46e-01 | 98.6% | 73.6% |
| 3255773 | 3919.1.1.0 ↗ | alpha duplicates or obligate multimers › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 › N-terminal domain of COMMD9 | 0.59 | 50.0 | 4.86e-01 | 95.8% | 87.5% |
| 4956322 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.57 | 49.0 | 3.54e-01 | 98.6% | 32.1% |
| 4182671 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.56 | 49.0 | 3.34e-01 | 100.0% | 29.6% |
| 4619760 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.55 | 45.0 | 3.22e-01 | 95.8% | 30.0% |
| 4940598 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.55 | 40.0 | 3.97e-01 | 77.5% | 81.3% |
| 4595958 | 632.22.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats | 0.53 | 37.0 | 3.26e-01 | 73.2% | 73.6% |
| 3251011 | 3711.1.1.0 ↗ | alpha bundles › LTXXQ motif family protein › LTXXQ motif family protein › LTXXQ motif family protein | 0.53 | 43.0 | 3.09e-01 | 97.2% | 48.6% |
| 3691086 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.52 | 39.0 | 3.64e-01 | 81.7% | 97.8% |
| 3511230 | 632.2.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains | 0.50 | 37.0 | 3.40e-01 | 78.9% | 70.5% |
| 3590589 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.50 | 38.0 | 3.53e-01 | 80.3% | 71.1% |