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OL955261.1__UIS25268.1__X__00068

Bact-Vir

OL955261.1__UIS25268.1__X__00068

Identity

Accession:
OL955261 ↗
Kingdom:
phage

Quality

76.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Erythrobacter_phage_vB_EliS-L02

TaxID: 2909139

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 212-342_426-470
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2dmwA01 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.61 31.0 3.81e-01 88.1% 74.1%
1ifqB00 3.30.450.50 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Longin domain 0.56 31.0 3.58e-01 88.1% 73.4%
2zttA00 6.10.140.720 Special › Helix non-globular › Helix Hairpins › 0.55 20.0 2.97e-01 80.7% 72.6%
4qwoB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.51 35.0 3.94e-01 89.8% 91.7%
ECOD (11)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3548841 2008.6.1.1 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Acetyl-CoA carboxylase AC4 and AC5 domains › Acetyl-CoA carboxylase AC4 and AC5 domains › ACC_central 0.62 36.0 3.03e-01 71.0% 34.0%
5071765 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 35.0 4.06e-01 88.6% 76.8%
5072327 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 35.0 3.96e-01 89.2% 74.1%
3249305 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 35.0 4.39e-01 97.2% 96.2%
4978622 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 32.0 4.05e-01 88.1% 89.0%
4996048 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.59 34.0 3.90e-01 88.6% 75.4%
5073557 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 35.0 3.89e-01 89.8% 75.0%
4976967 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 36.0 3.91e-01 89.8% 74.7%
5048715 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 33.0 3.68e-01 89.8% 73.8%
3391610 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 36.0 3.92e-01 89.8% 81.3%
4941167 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.51 28.0 3.30e-01 99.4% 74.2%
D2 high residues 484-629
PDB
Domain cluster: rep: SRR1747065_scaffold_10_prodigal-single.1__X__X__00254__D452-559_579-599
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vwxT01 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.63 34.0 4.01e-01 75.3% 76.3%
1wnhA01 3.10.450.10 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 33.0 3.85e-01 88.4% 88.0%
ECOD (9)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3272363 4.1.1.219 ↗ beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.64 31.0 3.79e-01 91.8% 70.5%
4281699 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.64 33.0 4.48e-01 95.9% 97.3%
4073433 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.63 33.0 4.31e-01 93.8% 91.3%
4340758 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 31.0 4.28e-01 91.8% 100.0%
4078162 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 32.0 4.16e-01 71.2% 94.6%
4483091 4.1.1.1 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_1 0.56 31.0 3.58e-01 71.2% 72.4%
3188712 4.1.1.225 ↗ beta barrels › SH3 › SH3 › SH3 › DUF7025 0.56 36.0 4.21e-01 97.3% 94.0%
3740784 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.55 27.0 3.49e-01 90.4% 81.2%
3467829 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 40.0 3.29e-01 74.7% 81.2%
D3 medium residues 18-124_166-211
PDB
Domain cluster: rep: SR-VP_4-6_scaffold_141_476970_prodigal-single.1__X__X__00343__D35-125_164-213
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4qqgG00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 34.0 5.01e-01 81.0% 94.4%
4l0rB00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.69 32.0 4.68e-01 81.7% 94.5%
1y96A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 33.0 4.23e-01 85.6% 93.0%
4iloA00 1.10.287.1490 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.60 36.0 3.02e-01 83.7% 38.1%
2p5tA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.60 28.0 3.47e-01 79.1% 69.6%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.60 30.0 4.13e-01 83.7% 96.1%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 31.0 4.05e-01 79.1% 87.8%
1i6zA00 1.20.58.120 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain 0.55 32.0 3.46e-01 70.6% 65.2%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3244430 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.83 37.0 4.52e-01 76.5% 63.8%
3572964 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.79 37.0 3.67e-01 75.8% 42.4%
4264671 4.1.1.97 ↗ beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.66 32.0 4.32e-01 80.4% 88.7%
3713672 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 38.0 4.34e-01 78.4% 80.0%
3913637 4.1.1.31 ↗ beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.62 37.0 4.68e-01 90.2% 100.0%
3608011 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 37.0 4.14e-01 78.4% 80.8%
4805104 601.19.1.1 ↗ alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein › Apolipoprotein 0.58 30.0 3.85e-01 82.4% 88.0%
3763454 5086.1.1.87 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › ING 0.58 36.0 4.13e-01 88.2% 81.7%
3342793 4.1.1.42 ↗ beta barrels › SH3 › SH3 › SH3 › Agenet 0.54 37.0 3.46e-01 73.9% 56.3%
3217770 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.54 32.0 3.83e-01 78.4% 88.0%
3221606 5086.1.1.0 ↗ alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins 0.53 34.0 3.92e-01 82.4% 91.4%
3731692 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.51 40.0 4.35e-01 86.9% 96.9%
D4 medium residues 343-425
PDB
Domain cluster: representative
CATH (9)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4cqiA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 45.0 4.17e-01 100.0% 61.7%
2wgmA01 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.60 48.0 4.82e-01 95.2% 85.4%
4dvyP01 1.10.357.130 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.59 48.0 3.61e-01 89.2% 36.5%
5dn6J00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.59 46.0 4.83e-01 96.4% 93.2%
2x2vA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.58 44.0 4.86e-01 94.0% 100.0%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.56 45.0 4.49e-01 95.2% 84.7%
3wirA02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.54 41.0 2.70e-01 81.9% 24.9%
3cueC00 3.30.450.70 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.53 42.0 3.54e-01 86.7% 95.8%
2qkdA02 2.60.120.1040 Mainly Beta › Sandwich › Jelly Rolls › ZPR1, A/B domain 0.51 41.0 3.49e-01 89.2% 78.6%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3333417 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.66 50.0 4.89e-01 92.8% 73.3%
4935077 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.65 49.0 5.17e-01 92.8% 88.0%
3489720 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.64 46.0 4.22e-01 100.0% 57.3%
3988424 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.63 46.0 5.15e-01 94.0% 96.9%
5075725 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.63 53.0 4.33e-01 90.4% 73.8%
4365052 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.61 50.0 4.75e-01 95.2% 75.8%
5075524 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.60 51.0 3.88e-01 92.8% 54.9%
4995140 2484.1.1.124 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › OrfB_IS605 0.60 52.0 4.25e-01 92.8% 77.2%
4107823 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.60 49.0 4.60e-01 95.2% 72.0%
4934281 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 51.0 4.23e-01 92.8% 82.6%
5013223 2484.1.1.302 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.60 49.0 3.70e-01 90.4% 55.6%
4109908 5041.1.1.1 ↗ extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.57 48.0 4.84e-01 95.2% 97.6%