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OL955261.1__UIS25294.1__X__00094

Bact-Vir

OL955261.1__UIS25294.1__X__00094

Identity

Accession:
OL955261 ↗
Kingdom:
phage

Quality

46.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Erythrobacter_phage_vB_EliS-L02

TaxID: 2909139

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-73
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1sfeA01 3.30.160.70 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Methylated DNA-protein cysteine methyltransferase domain 0.68 46.0 4.37e-01 92.9% 60.5%
2dhjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.66 44.0 3.63e-01 75.7% 38.4%
2dn6A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 45.0 3.86e-01 80.0% 43.5%
5yrzA01 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 55.0 4.85e-01 94.3% 91.4%
2yztA00 3.30.160.250 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.65 49.0 5.03e-01 94.3% 84.8%
1upqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.65 44.0 3.80e-01 72.9% 45.8%
4l0mA00 3.40.50.1580 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleoside phosphorylase domain 0.64 50.0 3.48e-01 85.7% 97.9%
2cocA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 43.0 3.82e-01 74.3% 49.0%
2p0hA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 43.0 3.63e-01 77.1% 42.4%
5cz2C00 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.61 50.0 3.98e-01 92.9% 55.3%
2ffgA00 3.30.720.20 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › Protein of unknown function DUF1797 0.60 45.0 4.36e-01 81.4% 88.7%
1x47A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 45.0 4.25e-01 82.9% 87.4%
3d22A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.59 48.0 4.01e-01 91.4% 88.4%
4cy8A03 3.40.30.120 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › 0.59 45.0 3.54e-01 84.3% 54.4%
1ntyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 42.0 3.46e-01 77.1% 41.9%
3hrgA02 3.30.420.260 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain 0.58 48.0 4.12e-01 92.9% 67.5%
3fehA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 44.0 3.71e-01 87.1% 54.0%
3ttgA00 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.55 43.0 2.84e-01 87.1% 53.7%
1a31A03 3.90.15.10 Alpha Beta › Alpha-Beta Complex › Topoisomerase I; Chain A, domain 3 › Topoisomerase I; Chain A, domain 3 0.55 41.0 3.17e-01 95.7% 36.7%
3c6aA00 3.30.420.240 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › 0.54 45.0 3.28e-01 92.9% 42.4%
1ii2A03 3.90.228.20 Alpha Beta › Alpha-Beta Complex › Phosphoenolpyruvate Carboxykinase; domain 3 › 0.53 44.0 3.11e-01 100.0% 71.5%
6i1cA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 45.0 3.92e-01 97.1% 100.0%
3tc9A02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.51 40.0 2.59e-01 85.7% 23.8%
1hdhA02 3.30.1120.10 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.50 34.0 3.33e-01 70.0% 71.4%
2mmpA00 3.30.160.830 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.50 34.0 3.36e-01 71.4% 96.1%
2z17A00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.50 36.0 3.36e-01 78.6% 73.4%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4431929 4100.1.1.4 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › UPF0150 0.71 56.0 5.78e-01 94.3% 92.3%
3550157 220.1.1.164 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26089 0.70 52.0 3.77e-01 78.6% 38.9%
4967355 4100.1.1.3 ↗ a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › HicB_lk_antitox 0.70 53.0 5.54e-01 90.0% 89.2%
4637340 902.1.1.1 ↗ few secondary structure elements › Amb V allergen › Amb V allergen › Amb V allergen › Ragweed_pollen 0.67 43.0 5.17e-01 70.0% 100.0%
3595461 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 51.0 4.31e-01 80.0% 53.0%
3700960 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.65 45.0 3.98e-01 88.6% 48.6%
4203238 220.1.1.217 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH, GRAM 0.65 47.0 3.19e-01 80.0% 21.2%
3599101 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.65 44.0 3.72e-01 74.3% 42.6%
3743354 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 46.0 4.08e-01 75.7% 53.0%
3494433 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.64 49.0 4.06e-01 82.9% 50.8%
3618660 386.1.1.4 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-BED 0.64 48.0 5.11e-01 94.3% 96.7%
4889666 11.2.1.117 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › PI-PLC-Y 0.64 45.0 3.79e-01 75.7% 44.1%
3993195 859.1.1.0 ↗ a+b two layers › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 › The spindle assembly checkpoint protein mad2 0.63 44.0 3.50e-01 71.4% 94.6%
3937147 5001.1.1.41 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw 0.63 45.0 2.84e-01 75.7% 30.8%
3402998 386.1.1.300 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › PF30733 0.63 47.0 4.84e-01 81.4% 93.8%
3947081 4210.1.1.0 ↗ a+b two layers › WGR domain › WGR domain › WGR domain 0.62 51.0 5.36e-01 90.0% 100.0%
3506713 304.107.1.1 ↗ a+b two layers › Alpha-beta plaits › Aminomethyltransferase folate-binding domain › Aminomethyltransferase folate-binding domain › GCV_T 0.62 52.0 3.59e-01 95.7% 90.4%
3562058 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 45.0 3.68e-01 80.0% 42.4%
3897030 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 44.0 3.77e-01 78.6% 46.1%
3596345 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 48.0 3.99e-01 82.9% 52.5%
3258602 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 44.0 3.63e-01 78.6% 42.4%
3939453 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.61 48.0 3.90e-01 84.3% 47.7%
3184536 223.2.1.32 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 0.60 45.0 3.68e-01 80.0% 43.8%
3330513 2485.1.1.1 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.60 44.0 3.68e-01 78.6% 85.5%
4931272 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.60 45.0 4.09e-01 80.0% 60.0%
3270836 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.60 40.0 3.38e-01 77.1% 41.7%
3860383 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 44.0 3.55e-01 90.0% 38.6%
3742474 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.59 46.0 4.52e-01 84.3% 89.3%
3913945 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.59 42.0 3.45e-01 78.6% 41.4%
3388849 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.58 39.0 3.12e-01 78.6% 33.8%
4934950 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 40.0 3.26e-01 75.7% 39.2%
3905168 220.1.1.1 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.56 44.0 3.64e-01 87.1% 53.1%
3513128 220.1.1.50 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_17 0.55 46.0 3.64e-01 91.4% 51.3%
4026251 2492.1.1.8 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › UPF0172 0.55 40.0 3.04e-01 78.6% 50.5%
3931076 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.55 44.0 3.77e-01 90.0% 85.0%
3269529 5.1.4.605 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PH 0.55 42.0 2.71e-01 97.1% 15.3%
3216096 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.55 40.0 3.50e-01 82.9% 90.0%
3249381 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.55 40.0 3.13e-01 84.3% 33.9%
4996690 4160.1.1.0 ↗ beta complex topology › Barrel domain in thermophilic metalloproteases (M29) › Barrel domain in thermophilic metalloproteases (M29) › Barrel domain in thermophilic metalloproteases (M29) 0.55 38.0 2.72e-01 74.3% 69.6%
3756865 220.1.1.170 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_alsin 0.54 45.0 3.59e-01 90.0% 50.0%
3596095 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.54 45.0 2.96e-01 98.6% 42.3%
3269500 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 38.0 3.37e-01 97.1% 52.5%
4943782 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.53 38.0 3.20e-01 77.1% 69.2%
3627627 220.1.1.66 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.52 43.0 3.43e-01 91.4% 44.8%
3954941 244.4.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › Ni-Fe binding domain in nickel-iron hydrogenase large subunit › Ni-Fe binding domain in nickel-iron hydrogenase large subunit 0.52 41.0 3.84e-01 90.0% 73.3%
4979326 102.2.1.0 ↗ alpha arrays › HhH/H2TH › H2TH › H2TH 0.52 39.0 3.21e-01 80.0% 58.4%
4977300 871.1.1.0 ↗ a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) 0.51 38.0 3.05e-01 80.0% 75.0%
5039031 220.1.1.76 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_2 0.51 36.0 3.15e-01 77.1% 47.3%
5004624 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 34.0 3.19e-01 94.3% 53.7%
D2 medium residues 123-144_165-242
PDB